Handles creating, reading and updating training events.

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            "name": "Analyse de données NGS dédiée à la génomique végétale en Afrique de l'Ouest",
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            "description": "Les avancées spectaculaires des technologies de séquençage de 2ème et 3ème génération sont une véritable révolution pour la recherche en science de la vie. Ces techniques permettent le séquençage en quelques semaines de génomes entiers d’organismes complexes, générant une explosion du volume de données génomiques. \n\t\t\tToutefois l’analyse de telles masses d’informations nécessite des compétences en linux, en bioinformatique ainsi qu’une bonne connaissance et maîtrise de nombreux algorithmes et logiciels. La réalisation de ces analyses nécessite également l’accès à des ressources de calcul telles que des clusters de calcul. \n\t\t\tLe DP IAVAO et le LMI LAPSE en collaboration avec la plateforme bioinformatique South Green organisent, du 4 au 12 Octobre 2018, une formation en bioinformatique dédié à l’analyse de données de séquençage dont les objectifs sont de présenter les technologies de séquençage et les différentes analyses bioinformatiques pour exploiter au mieux cette masse de données afin de pouvoir réaliser des projets génomiques à grande échelle sur leurs modèles (plantes et pathogènes).\nPrérequis\nAucun\n\nProgramme\nLinux et lignes de commandes \nInitiation à l’utilisation du cluster du CERAAS \nPrésentation des technologies de séquençages \nAppel de SNP sur des données WGS \nPost analyse de données de SNPs\nOutils Genome Harvest \n\n\nObjectifs\nAprès la formation, les participants seront capables de :\nse connecter à un cluster Linux\nlancer des programmes/analyses bioinformatiques\ndéfinir les étapes pour analyser des données de séquençage\nanalyser des données de séquençage\nutiliser des gestionnaires de workflow tel que Galaxy ou TOGGLe\n\n\nInstructors\nChristine Tranchant (CT) - christine.tranchant@ird.fr\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat (BP) - bertrand.pitollat@cirad.fr\nFrançois Sabot (SB) - francois.sabot@ird.fr\nManuel Ruiz (MR) - manuel.ruiz@cirad.fr\nGautier Sarah (GS) - gautier.sarah@cirad.fr\n\n",
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            "description": "The Toulouse Genotoul bioinformatics platform, organizes a 2 days long training course for non computer scientist and biologists aiming at learning the foundation of Python programming. In this training you will learn the basics of programming (variables, functions, control structures such as “if” condition, “for” loop”), writing simple programs which read files, and write results to others. The training course does not require any knowledge in programming, but basic Linux/bash commands are required (cd, ls).\r\n\r\nThis training focuses on practice. It consists of modules with a large variety of exercises described hereunder (PROVISIONAL SCHEDULE):\r\n\r\nUsing a Jupyter notebook (Day 1).\r\nUsing variables (Day 1).\r\nBasic operations and functions (Day 1).\r\nReading a file, writing to a file (Day 1).\r\nCharacter string manipulation (Day 1).\r\nLists and dictionaries (Day 2).\r\nThe if and for controls (Day 2).\r\nBases of algorithms (Day 2).",
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            "name": "HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ?",
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            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm",
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            "name": "Diplôme Universitaire en Bioinformatique Intégrative",
            "shortName": "DU-Bii",
            "description": "La bioinformatique est devenue une compétence incontournable pour l'analyse de données de nature diverse : génomes, transcriptomes, protéomes, métabolomes, structures macromoléculaires, réseaux d'interactions. L'appropriation par les biologistes des méthodes et outils de biostatistique et bioinformatique intégrative est un enjeu majeur pour la montée en compétence des équipes de recherche et des plateformes de service.\r\n\r\nL'université Paris Diderot propose en partenariat avec l'Institut Français de Bioinformatique (IFB) la deuxième édition du Diplôme Universitaire en Bioinformatique intégrative (DU-Bii). Cette formation s’adresse en priorité à des biologistes en demande d'évolution ou de reconversion professionnelle ayant déjà acquis des compétences (formation courte, autoapprentissage, expérience de terrain) en informatique ou bioinformatique/biostatistique (environnement Unix, Python ou R ou autre langage de programmation). Les prérequis sont décrits sur le portail “DU” de l’université Paris Diderot, qui présente le DU-Bii et le DU complémentaire \"Création, Analyse et Valorisation de données omiques\" (DUO).\r\n\r\nLe DU-Bii fournira une formation théorique et pratique, complétée par une période d'immersion sur l'une des plateformes régionales de l'IFB, qui mobilisera, dans le cadre d'un projet tutoré, l'ensemble des méthodes et outils appris durant les cours pour réaliser un projet personnel de bioinformatique intégrative. Ce projet combinera des données propres à chaque participant produites dans son laboratoire (principe BYOD : “Bring Your Own Data”) ou collectées à partir de bases de données publiques.\r\n\r\nRenseignements et candidatures : fcsdv@univ-paris-diderot.fr\r\nInscriptions : voir la page page du DU-Bii de l'Université Paris Diderot\r\nContacts Paris-Diderot : Bertrand.Cosson@univ-paris-diderot.fr \r\nContacts IFB : Helene.Chiapello@inra.fr, Jacques.van-Helden@univ-amu.fr",
            "homepage": "https://www.france-bioinformatique.fr/dubii/",
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            "id": 315,
            "name": "Using sed and awk to modify large large text files",
            "shortName": "",
            "description": "Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions.  The course is based mainly on exercises with small sections presenting concepts and commands.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
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            "updated_at": "2025-12-01T11:57:16.182121Z",
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            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands  (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/linux-2-2/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
                "http://edamontology.org/topic_3316"
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            "id": 332,
            "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING",
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            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
            "is_draft": false,
            "costs": [
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                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [
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                "http://edamontology.org/topic_2885"
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            ],
            "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png",
            "updated_at": "2025-12-01T11:54:41.351028Z",
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            "name": "Cluster",
            "shortName": "",
            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
            "is_draft": false,
            "costs": [
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                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
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            ],
            "openTo": "Everyone",
            "accessConditions": "You need to register (via the website) and pay 170 euros a day for academic and 550 euros a day for a private.",
            "maxParticipants": 12,
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            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2025-12-01T11:56:37.014694Z",
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                    "name": "Cluster Slides",
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                {
                    "id": 140,
                    "name": "TP Cluster",
                    "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/TP%20Cluster/?format=api"
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            ],
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                "https://catalogue.france-bioinformatique.fr/api/event/610/?format=api",
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        },
        {
            "id": 388,
            "name": "Analysis of shotgun metagenomic data",
            "shortName": "",
            "description": "This training session is organized by the Genotoul bioinfo platform. This course is dedicated to the analysis of prokaryotic shotgun metagenomic data from Illumina and Pacbio HiFi sequencing technology. \r\n\r\nAfter an overview of metagenomics and the biases and limitations of analyses, we will look at the main steps involved in analysing metagenomic data and launch independent tools on the genobioinfo cluster.\r\nLearners will then test a workflow to automate processing on a test dataset (metagWGS ).\r\nOn the third day, learners will choose which analysis strategy to start with according to their experimental design and launch the first stage of metagWGS on their own data.\r\nBy the end of the course, trainees will be familiar with the scope, advantages and limitations of shotgun sequencing data analysis and will have started the analysis on their own data.\r\n\r\ncalendar\r\n \r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nFirst Day\r\nStart at 09:00 am\r\nTour de table\r\nIntroduction to metagenomics, Illumina and Pacbio data, analysis stages, analysis limits, etc.\r\nPresentation of some key tools for each stage\r\nPractical work on the main stages launched independently\r\nEnd at 17:00 pm\r\nSecond Day\r\nStart at 09:00 am\r\nIntroduction to the advantages and disadvantages of workflows and containers\r\nLaunch of the data cleansing stage\r\nLaunch of the rest of the workflow and analysis of the multiQC report\r\nEnd at 17:00 pm\r\nThird Day – BYOD\r\nStart at 09:00 am\r\nDefine the analysis strategy and launch the start of the analysis of your own data.\r\nEnd at 17:00 pm maximum",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/analysis-of-shotgun-metagenomic-data/",
            "is_draft": false,
            "costs": [
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                "Academic non-INRAE for academic but non-INRAE: 510 € + 20% taxes (TVA)",
                "INRAE for INRAE's staff: 450 € no VAT charged"
            ],
            "topics": [
                "http://edamontology.org/topic_3174"
            ],
            "keywords": [
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            ],
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                "Cluster"
            ],
            "openTo": "Everyone",
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                    "name": "BioinfOmics",
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                },
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                    "id": 82,
                    "name": "INRAE",
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                },
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            "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
            "updated_at": "2025-12-01T11:55:10.179665Z",
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            "audienceRoles": [
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            "difficultyLevel": "Intermediate",
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        },
        {
            "id": 333,
            "name": "Improve your command line skills by learning a few words of Perl",
            "shortName": "",
            "description": "This “Perl one-liners” training session is organized by the Sigenae platform. Perl one-liners are small and awesome Perl programs that fit in a single line of code and perform many operations such as replacing of text, spacing, deleting, calculation, manipulation in files and many more. This training will allow you to discover the power of Perl on the command line and learn how to use it to automate your file manipulations and command line generation with classical file formats such as tabulated text, fastq, sam/bam, and vcf.\r\n\r\nThis training lasts one day and is focused on practice. It consists of 3 parts with a large variety of exercises:\r\n\r\nIntroduction to Perl and its characteristics: Perl is a widely used programming language for data processing and task automation. We will introduce the main characteristics of Perl and discuss why it is particularly suited for biologists who want to manipulate files and generate command lines.\r\nPerl on the command line: we will show how to use Perl on the command line to perform common tasks, such as searching and replacing strings, merging files, and loop over lists of files.\r\nConcrete examples: we will present several concrete examples drawn from biology, such as extracting information from genomic sequence files, converting files between different formats, and generating command lines for data biology tools.\r\n \r\nThe session will take place in the room ‘salle de formation MIAT’ at INRAE center of Toulouse-Auzeville.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/onelineperl/",
            "is_draft": false,
            "costs": [
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
            ],
            "topics": [],
            "keywords": [
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            ],
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            "updated_at": "2025-12-01T11:56:55.465635Z",
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            "difficultyLevel": "Novice",
            "trainingMaterials": [
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                    "name": "One line perl",
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                }
            ],
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        },
        {
            "id": 303,
            "name": "Tools for phylogenetic analysis",
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            "description": "You will learn How to find homologs, make multiple alignments, reconstruct the phylogeny, visualize the tree.\r\n\r\nAt the end of the workshop, you will be able to use web tools to reconstruct accurate phylogenies.\r\n\r\nUnless all participants speak French, the course will be taught in English.",
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            ],
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        },
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            "homepage": "",
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            "costs": [
                "Free"
            ],
            "topics": [
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                "http://edamontology.org/topic_3298",
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                "http://edamontology.org/topic_0625"
            ],
            "keywords": [
                "Données"
            ],
            "prerequisites": [
                "none"
            ],
            "openTo": "Everyone",
            "accessConditions": "Public",
            "maxParticipants": null,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api",
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            ],
            "elixirPlatforms": [],
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            "organisedByOrganisations": [
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                    "name": "URGI - US1164",
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                },
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                    "id": 82,
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            ],
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                    "name": "URGI",
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                }
            ],
            "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png",
            "updated_at": "2025-11-28T13:19:07.566534Z",
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                "https://catalogue.france-bioinformatique.fr/api/event/734/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/736/?format=api"
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        },
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            "id": 397,
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            "shortName": "WheatIS Search",
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            "is_draft": false,
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                "Free"
            ],
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                "http://edamontology.org/topic_3366",
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                "http://edamontology.org/topic_0091",
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                "Données"
            ],
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            "openTo": "Everyone",
            "accessConditions": "Public",
            "maxParticipants": null,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/userprofile/224/?format=api"
            ],
            "elixirPlatforms": [],
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                {
                    "id": 20,
                    "name": "Wheat Initiative",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Wheat%20Initiative/?format=api"
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            ],
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                    "id": 82,
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            ],
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                    "id": 26,
                    "name": "URGI",
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            ],
            "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png",
            "updated_at": "2025-09-12T12:46:23.549824Z",
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            ],
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            ],
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            ]
        },
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            "id": 318,
            "name": "Gestion des données d’expériences de phénotypage de plantes : standards et cas d’utilisation",
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            "is_draft": false,
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                "Free"
            ],
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                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_3571",
                "http://edamontology.org/topic_0625"
            ],
            "keywords": [
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            ],
            "prerequisites": [
                "none"
            ],
            "openTo": "Everyone",
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            "maxParticipants": null,
            "contacts": [
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            ],
            "elixirPlatforms": [],
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                },
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                    "id": 39,
                    "name": "URGI - US1164",
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            ],
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            ],
            "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png",
            "updated_at": "2025-09-12T12:48:25.868728Z",
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                "Professional (initial)",
                "Professional (continued)"
            ],
            "audienceRoles": [
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            ],
            "difficultyLevel": "Novice",
            "trainingMaterials": [],
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            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": false,
            "event_set": [
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            ]
        },
        {
            "id": 398,
            "name": "Practical session REPET",
            "shortName": "REPET",
            "description": "How to use REPET for de novo TE annotation",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0798"
            ],
            "keywords": [],
            "prerequisites": [
                "none"
            ],
            "openTo": "Everyone",
            "accessConditions": "Public",
            "maxParticipants": null,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/131/?format=api"
            ],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 82,
                    "name": "INRAE",
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                },
                {
                    "id": 39,
                    "name": "URGI - US1164",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 26,
                    "name": "URGI",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api"
                }
            ],
            "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png",
            "updated_at": "2025-09-12T12:48:41.366810Z",
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            "difficultyLevel": "Novice",
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}