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{
    "id": 670,
    "name": "Analysis of shotgun metagenomic data - May 2025",
    "shortName": "",
    "description": "This training session is organized by the Genotoul bioinfo platform. This course is dedicated to the analysis of prokaryotic shotgun metagenomic data from Illumina and Pacbio HiFi sequencing technology. \r\n\r\nAfter an overview of metagenomics and the biases and limitations of analyses, we will look at the main steps involved in analysing metagenomic data and launch independent tools on the genobioinfo cluster.\r\nLearners will then test a workflow to automate processing on a test dataset (metagWGS ).\r\nOn the third day, learners will choose which analysis strategy to start with according to their experimental design and launch the first stage of metagWGS on their own data.\r\nBy the end of the course, trainees will be familiar with the scope, advantages and limitations of shotgun sequencing data analysis and will have started the analysis on their own data.\r\n\r\ncalendar\r\n \r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nFirst Day\r\nStart at 09:00 am\r\nTour de table\r\nIntroduction to metagenomics, Illumina and Pacbio data, analysis stages, analysis limits, etc.\r\nPresentation of some key tools for each stage\r\nPractical work on the main stages launched independently\r\nEnd at 17:00 pm\r\nSecond Day\r\nStart at 09:00 am\r\nIntroduction to the advantages and disadvantages of workflows and containers\r\nLaunch of the data cleansing stage\r\nLaunch of the rest of the workflow and analysis of the multiQC report\r\nEnd at 17:00 pm\r\nThird Day – BYOD\r\nStart at 09:00 am\r\nDefine the analysis strategy and launch the start of the analysis of your own data.\r\nEnd at 17:00 pm maximum",
    "homepage": "https://bioinfo.genotoul.fr/index.php/events/analysis-of-shotgun-metagenomic-data/",
    "is_draft": false,
    "costs": [
        "Non-academic for non-academic: 1650€ + 20% taxes (TVA)",
        "Academic non-INRAE for academic but non-INRAE: 510 € + 20% taxes (TVA)",
        "INRAE for INRAE's staff: 450 € no VAT charged"
    ],
    "topics": [
        "http://edamontology.org/topic_3174"
    ],
    "keywords": [
        "NGS Data Analysis",
        "Metagenomics"
    ],
    "prerequisites": [
        "Linux/Unix",
        "Cluster"
    ],
    "openTo": "Everyone",
    "accessConditions": "",
    "maxParticipants": 12,
    "contacts": [
        "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api"
    ],
    "elixirPlatforms": [],
    "communities": [],
    "sponsoredBy": [],
    "organisedByOrganisations": [
        {
            "id": 82,
            "name": "INRAE",
            "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api"
        },
        {
            "id": 88,
            "name": "BioinfOmics",
            "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api"
        },
        {
            "id": 37,
            "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse",
            "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api"
        }
    ],
    "organisedByTeams": [
        {
            "id": 22,
            "name": "Genotoul-bioinfo",
            "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
        }
    ],
    "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
    "updated_at": "2024-12-06T20:59:00.699915Z",
    "type": "Training course",
    "start_date": "2025-05-05",
    "end_date": "2025-05-07",
    "venue": "",
    "city": "castanet-tolosan",
    "country": "France",
    "geographical_range": "",
    "trainers": [],
    "trainingMaterials": [],
    "computingFacilities": [],
    "realisation_status": "past",
    "registration_opening": "2024-12-06",
    "registration_closing": "2025-04-23",
    "registration_status": "closed",
    "courseMode": "Onsite"
}