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{
    "id": 636,
    "name": "How To Run a NF-Core Nextflow Workflow On Genotoul ? - session 12/11/2024",
    "shortName": "Nextflow/nf-core - session 12/11/2024",
    "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm",
    "homepage": "https://bioinfo.genotoul.fr/index.php/events/how-to-run-a-nf-core-nextflow-workflow-on-genotoul-2/",
    "is_draft": false,
    "costs": [
        "Non-academic: 550€ + 20% taxes (TVA)",
        "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
        "For INRAE's staff: 150 € no VAT charged;"
    ],
    "topics": [
        "http://edamontology.org/topic_0769"
    ],
    "keywords": [
        "Nextflow"
    ],
    "prerequisites": [
        "Linux/Unix",
        "Cluster"
    ],
    "openTo": "Everyone",
    "accessConditions": "",
    "maxParticipants": 12,
    "contacts": [
        "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api"
    ],
    "elixirPlatforms": [],
    "communities": [],
    "sponsoredBy": [],
    "organisedByOrganisations": [
        {
            "id": 15,
            "name": "MIAT",
            "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api"
        }
    ],
    "organisedByTeams": [
        {
            "id": 22,
            "name": "Genotoul-bioinfo",
            "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api"
        }
    ],
    "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png",
    "updated_at": "2024-06-10T12:38:11.016801Z",
    "type": "Training course",
    "start_date": "2024-11-12",
    "end_date": "2024-11-12",
    "venue": "",
    "city": "castanet-tolosan",
    "country": "France",
    "geographical_range": "",
    "trainers": [
        "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api",
        "https://catalogue.france-bioinformatique.fr/api/userprofile/470/?format=api"
    ],
    "trainingMaterials": [
        {
            "id": 143,
            "name": "workflows nf-core",
            "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/workflows%20nf-core/?format=api"
        }
    ],
    "computingFacilities": [],
    "realisation_status": "past",
    "registration_opening": "2024-06-05",
    "registration_closing": "2024-11-06",
    "registration_status": "closed",
    "courseMode": "Online"
}