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{
    "id": 388,
    "name": "RNASeq analyses (using Galaxy and TOGGLe)",
    "shortName": "",
    "description": "This course offers an introduction to RNASeq analyses using two different workflow management systems: Galaxy and TOGGLe. This includes reference-based mapping, estimates of transcript levels, differential expression (DE) analyses, visualization of statistics results.\nPrerequisites\nWorkflow management system (Galaxy, TOGGLe)\n\nProgram\nMapping of RNASeq against a transcriptome reference with kallisto (Galaxy)\nMapping of RNASeq against an annotated genome reference with TopHat (TOGGLe)\nDifferential expression analysis using EdgeR and DESeq2\nPlots, clustering, co-expression network: degust, WGCNA\n\n\nLearning objectives\nManipulate packages/tools available for searching DE genes\nThink about different normalisation methods\nDetect differentially expressed genes\nCompare results between two approaches\n\n\nInstructors\nAlexis Dereeper - alexis.dereeper@ird.fr\nSebastien Cunnac - sebastien.cunnac@ird.fr\nSebastien Ravel - sebastien.ravel@cirad.fr\nChristine Tranchant  - christine.tranchant@ird.fr\n\n",
    "homepage": "https://southgreenplatform.github.io/trainings//rnaseq/",
    "is_draft": false,
    "costs": [
        "Free"
    ],
    "topics": [],
    "keywords": [],
    "prerequisites": [],
    "openTo": "Internal personnel",
    "accessConditions": "",
    "maxParticipants": null,
    "contacts": [],
    "elixirPlatforms": [],
    "communities": [],
    "sponsoredBy": [],
    "organisedByOrganisations": [],
    "organisedByTeams": [
        {
            "id": 24,
            "name": "South Green",
            "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
        }
    ],
    "logo_url": "",
    "updated_at": "2022-06-02T11:50:50.627601Z",
    "type": "Training course",
    "start_date": "2018-03-15",
    "end_date": null,
    "venue": "",
    "city": "Centre IRD, Montpellier",
    "country": "",
    "geographical_range": "",
    "trainers": [],
    "trainingMaterials": [],
    "computingFacilities": [],
    "realisation_status": "past",
    "registration_opening": null,
    "registration_closing": null,
    "registration_status": "unknown",
    "courseMode": null
}