Handles creating, reading and updating training events.

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            "name": "INTRODUCTION TO PYTHON",
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            "description": "The Toulouse Genotoul bioinformatics platform, organizes a 2 days long training course for non computer scientist and biologists aiming at learning the foundation of Python programming. In this training you will learn the basics of programming (variables, functions, control structures such as “if” condition, “for” loop”), writing simple programs which read files, and write results to others. The training course does not require any knowledge in programming, but basic Linux/bash commands are required (cd, ls).\r\n\r\nThis training focuses on practice. It consists of modules with a large variety of exercises described hereunder (PROVISIONAL SCHEDULE):\r\n\r\nUsing a Jupyter notebook (Day 1).\r\nUsing variables (Day 1).\r\nBasic operations and functions (Day 1).\r\nReading a file, writing to a file (Day 1).\r\nCharacter string manipulation (Day 1).\r\nLists and dictionaries (Day 2).\r\nThe if and for controls (Day 2).\r\nBases of algorithms (Day 2).",
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            "name": "Introduction au text-mining avec AlvisNLP",
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            "name": "Soumission de données et métadonnées à EMBL-EBI",
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            "homepage": "https://southgreenplatform.github.io/training_reproducible_research/",
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            "updated_at": "2023-12-04T15:16:00.921744Z",
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            "id": 63,
            "name": "Cluster",
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            "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/cluster-2/",
            "is_draft": false,
            "costs": [
                "Priced",
                "Non-academic: 550€ + 20% taxes (TVA)",
                "Academic but non-INRAE: 170 € + 20% taxes (TVA)",
                "For INRAE's staff: 150 € no VAT charged;"
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            "openTo": "Everyone",
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                    "id": 37,
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            "updated_at": "2025-12-01T11:56:37.014694Z",
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                    "id": 139,
                    "name": "Cluster Slides",
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                {
                    "id": 140,
                    "name": "TP Cluster",
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            "id": 381,
            "name": "HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ?",
            "shortName": "Nextflow/nf-core",
            "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm",
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            "updated_at": "2025-12-01T11:57:33.124156Z",
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            "id": 274,
            "name": "Principes FAIR pour la gestion des données de recherche en sciences de la vie",
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            "description": "Présentation et application des principes FAIR de gestion des données dans un projet bioinformatique.\r\nL’Institut Français de Bioinformatique (IFB) organise une formation à destination de bioinformaticiens, biologistes et médecins impliqués dans des projets d’analyse bioinformatique de jeux de données omiques et souhaitant mettre en œuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) tout au long du déroulement du projet. La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.",
            "homepage": "https://ifb-elixirfr.github.io/IFB-FAIR-data-training/",
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            "logo_url": "https://www.france-bioinformatique.fr/wp-content/uploads/logo-ifb-couleur.svg",
            "updated_at": "2022-06-02T11:50:50.812642Z",
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            "learningOutcomes": "A la fin de cette formation, les participants connaîtront et pourront mettre en œuvre les principes de la science ouverte pour gérer leurs jeux de données dans un projet :\r\n- Les principes fondamentaux de l’Open Data en biologie et santé, y compris dans ses aspects juridiques ;\r\n- Les bonnes pratiques et outils de gestion des données d’un projet en bioinformatique, en lien avec les ressources de l’infrastructure IFB ;\r\n- Le PGD : séances théoriques et pratiques de construction d’un PGD sur des exemples de jeux de données omiques ;\r\n- Le choix des métadonnées : panorama des ressources existantes pour choisir des métadonnées et mise en pratique pour annoter des jeux de données omiques en vue de la publication des données dans une banque internationale ou un dataverse institutionnel.",
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            "id": 290,
            "name": "NGS data analysis on the command line",
            "shortName": "NGS-analysis-cli",
            "description": "This hands-on course will teach bioinformatic approaches for analyzing Illumina sequencing data. Our goal is to introduce the command line skills you need to make the most of your NGS data. \r\nDuring this 4-day training we will first introduce the Linux environment, shell commands and basic R scripting.  And then we will focus on two NGS data analyses -- small RNA-seq and RNA-seq -- based on published datasets from the model organism Arabidopsis thaliana",
            "homepage": "https://www.ibmp.cnrs.fr/bioinformatics-trainings/",
            "is_draft": false,
            "costs": [
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                "http://edamontology.org/topic_3170",
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            "name": "Formation d'initiation à la plateforme de stockage d'imagerie OMERO",
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            "description": "Cette session d'introduction a pour objectif la prise en main d'OMERO et le chargement d'images vers l'instance OMERO hébergée au Mésocentre Clermont Auvergne, service de la plateforme AuBi.\r\n\r\nQu'est-ce qu'OMERO ?\r\nOMERO est une plateforme logicielle permettant de visualiser, de gérer et d'annoter des données d'images scientifiques. OMERO vous permet d'importer et d'archiver vos images, de les annoter et de baliser vos images, d'enregistrer vos protocoles expérimentaux et d'exporter vos images dans de nombreux formats. Il vous permet également de collaborer avec des collègues en créant des groupes d'utilisateurs.\r\n\r\nPourquoi utiliser OMERO ?\r\nC'est très pratique ! Une fois vos données importées, vous n'avez plus à vous soucier des montages réseau et des structures de dossiers. Vos données sont consultables, vous pouvez les annoter, les visualiser, effectuer des flux de travail simples d'analyse d'images, les partager avec des collaborateurs et générer des figures de niveau publication, le tout directement depuis votre navigateur web.\r\n\r\nComment l'utiliser ?\r\nIl existe deux interfaces principales pour OMERO : un client de bureau (OMERO.insight) et une page web (OMERO.web). Elles ont toutes deux des caractéristiques similaires mais pas identiques. Venez découvrir ces outils lors de cette formation AuBi !\r\n\r\nPour cela, il est indispensable d'être équipé d'un ordinateur portable sur lequel omero insight sera installé en amont de la formation et d'avoir un compte actif au Mésocentre Clermont Auvergne qui vous permettra ensuite de vous connecter sur omero.web.",
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            "description": "Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions.  The course is based mainly on exercises with small sections presenting concepts and commands.",
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            "homepage": "https://documents.migale.inrae.fr/trainings.html",
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            ],
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                    "id": 82,
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            "updated_at": "2024-01-18T13:51:11.796060Z",
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            "name": "Linux - Initiation / Linux for Beginners",
            "shortName": "Linux Init",
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            "homepage": "https://abims.sb-roscoff.fr/module/linux_init",
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            "costs": [
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            "updated_at": "2025-02-21T08:34:15.576596Z",
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            "id": 332,
            "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING",
            "shortName": "",
            "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.",
            "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/",
            "is_draft": false,
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                "Non-academic: 550€ + 20% taxes (TVA)",
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                "For INRAE's staff: 150 € no VAT charged;"
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            "topics": [
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_2885"
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            "id": 287,
            "name": "Introduction to Oxford Nanopore Technology data analyses",
            "shortName": "Introduction to ONT data analyses",
            "description": "This course offers an introduction to ONT data analysis. It includes 5 issues: basecalling, reads quality control, assemblies and polishing/correction, contig quality and structural variants detection.",
            "homepage": "https://southgreenplatform.github.io/trainings//ont/",
            "is_draft": false,
            "costs": [
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            ],
            "topics": [
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            ],
            "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png",
            "updated_at": "2023-01-24T10:21:58.467251Z",
            "audienceTypes": [
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            ],
            "audienceRoles": [
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                "Biologists"
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            ],
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            "hoursPresentations": 6,
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        {
            "id": 289,
            "name": "Introduction to galaxy: looking for variants in prokaryotes",
            "shortName": "Introduction to galaxy",
            "description": "This course will focus on the technical aspects of using a galaxy server. Accessible without any prerequisite in computer science, it will allow you to master the different fundamental tools of galaxy and will open the doors of bioinformatics analysis for your different projects.\r\nDifferent questions will be addressed through an example of variants analysis in a prokaryotic organism. At the end of this course, on any accessible galaxy instance, you will be able to:\r\n- upload your data\r\n- map them on a reference genome\r\n- find the variants (SNPs) and analyze the results\r\n- generate, manipulate and share your workflows, data and histories\r\n- find the right tools for other analyses and use them in your own project.\r\n\r\nUnless all participants speak French, the course will be taught in English.",
            "homepage": "https://pliniuscursus.univ-amu.fr/formation/galaxy-platform/",
            "is_draft": false,
            "costs": [
                "Free to academics"
            ],
            "topics": [
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0622"
            ],
            "keywords": [],
            "prerequisites": [
                "Master"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "The first sessions are only available for IM2B students.",
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            ],
            "logo_url": null,
            "updated_at": "2022-06-02T11:50:50.812642Z",
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            ],
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            ],
            "difficultyLevel": "Novice",
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        },
        {
            "id": 382,
            "name": "Introduction à l'analyse de données transcriptomiques avec Galaxy",
            "shortName": "",
            "description": "L’objectif est de se familiariser avec les étapes d’analyses des données transcriptomiques ou RNA-seq avec référence pour extraire les gènes et fonctions différentiellement exprimés. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\n\r\nAprès une introduction à la transcriptomique, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité des données transcriptomiques,\r\n- aligner des données transcriptomiques sur un génome de référence,\r\n- estimer le nombre de séquences par gènes,\r\n- construire et faire une analyse d’expression différentielle des gènes\r\n- faire une analyse de l’enrichissement fonctionnel des gènes différentiellement exprimés",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Free to academics"
            ],
            "topics": [
                "http://edamontology.org/topic_3308",
                "http://edamontology.org/topic_1775",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3170"
            ],
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