Handles creating, reading and updating training events.

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            "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
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                "http://edamontology.org/topic_0797",
                "http://edamontology.org/topic_0085",
                "http://edamontology.org/topic_3301"
            ],
            "keywords": [],
            "prerequisites": [
                "Licence"
            ],
            "openTo": "Everyone",
            "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/",
            "maxParticipants": 12,
            "contacts": [],
            "elixirPlatforms": [],
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            "sponsoredBy": [
                {
                    "id": 15,
                    "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism",
                    "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api"
                }
            ],
            "organisedByOrganisations": [
                {
                    "id": 67,
                    "name": "University Paris-Saclay",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20Paris-Saclay/?format=api"
                }
            ],
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            "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/plateforme-logo/MicroScope_logo.png",
            "updated_at": "2022-06-02T11:50:50.812642Z",
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                "Graduate",
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            ],
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                "Researchers",
                "Life scientists",
                "Biologists",
                "Curators"
            ],
            "difficultyLevel": "Intermediate",
            "trainingMaterials": [],
            "learningOutcomes": "Annotation and comparative analysis of bacterial genomes:\r\n\r\n- acquire theoretical and practical knowledge of genome annotation tools (structural and functional annotation, metabolic networks annotation)\r\n- interpret the results of functional annotation tools\r\nperform various comparative analyses : conserved synteny analyses, pan-genome, phylogenetic and metabolic profiles.\r\n- analyse the results of metabolic networks prediction tools and look for candidate genes for enzyme activities.\r\n- use the tools to analyse the genome(s) of interest of participants",
            "hoursPresentations": null,
            "hoursHandsOn": null,
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            "personalised": false,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/439/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/506/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/436/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/507/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/577/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/576/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/659/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/658/?format=api"
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        },
        {
            "id": 335,
            "name": "FAIR_bioinfo_@_AuBi",
            "shortName": "FAIR_bioinfo",
            "description": "Introduction aux bonnes pratiques en bio-informatique afin de pérenniser son travail de recherche.\r\n\r\nCette formation permet de découvrir les bonnes pratiques dans le cadre d’un travail nécessitant des approches programmatiques (statistiques, programmation d’outils, analyses de données biologiques). Elle s’inscrit aussi dans l’aspect science-ouverte afin de rendre plus facilement disponible et pérenne le travail bio-informatique. Après une introduction aux pratiques FAIR axées notamment sur les notions de reproductibilité et de répétabilité du code, plusieurs approches seront abordées: les bonnes pratiques de partage et gestion des versions des outils utilisés ; la gestion des environnements de travail (conda, docker, singularity) ; découverte du gestionnaire de workflow Snakemake : et enfin la documentation du code avec Rmarkdown et Jupyter.",
            "homepage": "https://mesocentre.uca.fr/actualites/pratiques-fair-en-bioinformatique-pour-des-analyses-reproductibles",
            "is_draft": false,
            "costs": [
                "Free to academics"
            ],
            "topics": [
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3307",
                "http://edamontology.org/topic_3068"
            ],
            "keywords": [
                "Methodology",
                "Programming Languages & Computer Sciences",
                "Cloud",
                "Linux",
                "Snakemake",
                "Docker",
                "R"
            ],
            "prerequisites": [
                "Linux - Basic Knowledge"
            ],
            "openTo": "Everyone",
            "accessConditions": "Having an account on Mesocentre Clermont Auvergne Infrastructure",
            "maxParticipants": 15,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api"
            ],
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                    "id": 94,
                    "name": "University Clermont Auvergne",
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                }
            ],
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                }
            ],
            "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175",
            "updated_at": "2023-06-14T10:18:52.160465Z",
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            "audienceRoles": [],
            "difficultyLevel": "Novice",
            "trainingMaterials": [],
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            "hoursHandsOn": 20,
            "hoursTotal": 30,
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                "https://catalogue.france-bioinformatique.fr/api/event/709/?format=api"
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