Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=280&ordering=-contacts
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L’objectif est de présenter et expliquer les principales notions de statistiques utiles pour décrire un jeu de données, en explorer les propriétés afin d’en tirer des conclusions robustes, utiliser à bon escient les méthodes les plus courantes (tests d’hypothèse, ACP, …) et savoir lire, interpréter (et éventuellement aborder d’un œil critique) les résultats présentés dans les publications. Nous utiliserons le moins possible le formalisme mathématique mais insisterons sur les propriétés des méthodes, leurs pré-requis, l’interprétation des résultats. Nous aborderons les notions d’analyse exploratoire, ACP, clustering, estimation, échantillonnage, régression, tests d’hypothèse, planification d’expérience\nCe cours est une initiation à l’analyse de données. Il est préférable d’avoir une connaissance minimale de R. Dans le cas contraire, un tutoriel d’initiation est disponible sur la page web du cours et les notions de base de R seront rappelées pendant la pratique. Pour les personnes n’ayant jamais utilisé R, il peut être utile d’avoir des connaissances de base en programmation, quel que soit le langage.\nLes cours seront donnés en Français et alterneront théorie et pratique avec RStudio. Il est demandé à chaque participant de venir avec un ordinateur portable chargé sur lequel il aura préalablement installé les éléments nécessaires (R, Rstudio et les fichiers de données sur lesquels nous travaillerons). La liste complète des fichiers et logiciels nécessaires sera disponible sur la page web du cours une dizaine de jours avant le début de la session.\nderniere session: Mar 2016\n \n", "homepage": "https://c3bi.pasteur.fr", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Biostatistics", "Programming Languages & Computer Sciences", "Statistical Tests", "R Language", "Descriptive statistics" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "ouvert à tous, sur inscription.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/534/?format=api" ] }, { "id": 135, "name": "hands-on NGS course", "shortName": "", "description": "The aim of this course is to provide students with theory and practical\ntools to analyze Next Generation Sequencing (NGS) data. The course is\ncomposed of a theory and practice lessons . In the first week theory\nsessions will cover the main kind of HTS analyses (re-sequencing and\nvariant analysis, de-novo sequencing, transcriptomics, ChIP-Seq,\nmetagenomics), in addition to some general bioinformatics tools and\nBiostatistics. The second week is dedicated to practice, in which the\nstudents work with their own data in small groups with a mentor that\nguides them. The practice week is designed so the course is of immediate\nuse to each student. We expect the students to go back to their countries\nwith the necessary knowledge to continue working on their own data.\n", "homepage": "http://c3bi.pasteur.fr", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Methodology", "NGS Data Analysis", "Metagenomics", "Gene expression regulation analysis", "metatranscriptomics", "Chip-Seq", "Variant analysis", "Transcriptomics (RNA-seq)", "Genomics (DNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "belonging to the Institut Pasteur International Network (RIIP) and the University of Sao Paulo.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 136, "name": "LeiSHield training course on Next Generation Sequencing", "shortName": "", "description": "The primary aim of this course was to provide a basic understanding of the Leishmania genome, NGS technology and analysis tools, and to develop a basic pipeline for the students to start working on their data. This first pipeline will help to standardize all analysis done in the consortium and should facilitate a posterior paper publication. This pipeline will evolve\nin the context of a collaboration between the Leishield partners and the C3BI, taking into account the difficulties to analyze and interpret the sequence data generated, and the specific needs of each Consortium node. A future Workshop will be organized in June 2016 to tackle all these questions, and to have a follow-up on the analysis.\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "belonging to the Leishield consortium.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 137, "name": "Cours Pasteur Analyse des Génomes", "shortName": "", "description": "Chaque année, ce cours théorique et pratique d’une durée de sept semaines fait le tour\ndes concepts, techniques et outils nécessaires à l'étude des génomes, des étapes expérimentales à l’analyse des résultats. Il illustre les différents aspects de la génomique et de ses applications en se basant sur les résultats les plus récents de la recherche - voir plus\n", "homepage": "http://www.pasteur.fr/fr/enseignement/cours-pasteur/pole-mecanismes-du-vivant/an…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Biostatistics", "Sequence analysis", "Comparative genomics", "NGS Sequencing Data Analysis" ], "prerequisites": [ "Master" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/267/?format=api" ] }, { "id": 138, "name": "Rôles multiples de l’ARN", "shortName": "", "description": "Ce cours théorique et pratique de deux semaines est orienté sur les méthodes pour étudier la synthèse, maturation et la dégradation d’une large variété de molécules d’ARN dans les cellules eucaryotes - voir plus\n", "homepage": "https://www.pasteur.fr/fr/enseignement/programmes-doctoraux-et-cours/cours-paste…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Analysis of RNAseq data", "Transcriptomics (RNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [ "Master" ], "openTo": "Internal personnel", "accessConditions": "Les candidats doivent avoir de bonnes connaissances en génétique, biologie moléculaire et biochimie du niveau de la fin de première année de Master, ainsi qu’un niveau minimum (B1) en français ET en anglais. Les candidatures sont sélectionnées et évaluées par le Comité du cours.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/268/?format=api" ] }, { "id": 139, "name": "Programmation et scripting ", "shortName": "", "description": " Ce cours s'adresse à toute personne de l'institut Pasteur ou appartenant au réseau international (RIIP) souhaitant acquérir des bases de la programmation et du scripting utiles à la bioinformatique et ayant du mal à trouver du temps pour se former tout le long de l'année. \nInitiation unix 3 jours\nProgrammation Python 6 jours\nUtilisation d'un cluster de calcul 1 jour\nBiopython 2 jours\n \n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "Autres langages" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Membre de l'institut Pasteur ou au réseau international de l'Institut Pasteur (RIIP)\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 141, "name": "Biotechnologies et bioinformatique appliquées aux maladies rares", "shortName": "", "description": "Module optionnel du DIU Maladies rares : de la recherche au traitement.\n", "homepage": "http://fondation-maladiesrares.org/actualite/diu-maladies-rares-de-la-recherche-…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Bioinformatics & Biomedical", "Sequence analysis", "NGS Sequencing Data Analysis" ], "prerequisites": [ "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Internal personnel", "accessConditions": "Inscription au DIU Maladies rares : de la recherche au traitement\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/270/?format=api" ] }, { "id": 264, "name": "Linking gene and function, comparative genomics tools for biologists", "shortName": "", "description": "More than twenty years after the first bacterial genome has been sequenced, microbiologists are faced with an avalanche of genomic data. However the quality of the functional annotations of the sequenced proteome is very poor with more than half of the sequenced proteins remaining of unknown function. After taking this course, students should master an array of web-based tools to help to predict gene function. This will allow them to generate in silico based functional predictions and produce illustration for manuscripts that use comparative genomic methods. For background read (https://www.ncbi.nlm.nih.gov/pubmed/20001958)\n", "homepage": "https://c3bi.pasteur.fr/training-linking-gene-and-function-comparative-genomics-…", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "Functional and regulatory pathways comparison", "Genomes comparison", "Comparative genomics", "Databases and information systems" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/396/?format=api" ] }, { "id": 265, "name": "WAVES Training", "shortName": "", "description": "Workshop to train users to WAVES : a Web Application for Versatile Enhanced Bioinformatic Services\n", "homepage": "http://www.atgc-montpellier.fr/waves/trainings.php", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "La formation s'adresse à toute personne souhaitant installer/administer un serveur WAVES\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/194/?format=api" ] }, { "id": 144, "name": "FROGS formation : tools for bioinformatics and statistics analyses with amplicon metagenomics data", "shortName": "", "description": "This training session, organized by Bioinfo Genotoul, Sigenae, NED (GenPhySE) and TWB, is designed to help you to deal with NGS data of 16S, 18S ... DNA produced with MiSeq from Illumina and Roche 454 technologies in the Galaxy workbench.\nYou will discover how to use our Galaxy instance, clean reads, clusterize them, do the taxonomic affiliation and perform statistics to interpret your results.\nPrerequisites: knowledge of R or in another programming language\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/metagenomic-amplicons-and-stats-with…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Data Analysis", "Metagenomics", "metatranscriptomics", "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Subscribe by the web page : http://bioinfo.genotoul.fr/index.php/training-2/galaxy-training/.\nPrices : 165 euros per day for academic people, 550 per day otherwise.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/FROGS_logo_0.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/273/?format=api" ] }, { "id": 146, "name": "Introduction à la Phylogénie Moléculaire : CONCEPTS, METHODES ET OUTILS", "shortName": "", "description": "Le C3BI (Institut Pasteur) propose des cours pour acquérir les notions théoriques de phylogénie et maitriser les outils et logiciels.\nLes cours d’”Introduction à la phylogénie moléculaire” sont ouverts à tous (inscription obligatoire pour les cours et travaux pratiques dans la limite des places disponibles).\nIl est possible de ne s’inscrire que pour la partie théorique. Ces cours sont dispensés en langue française.\nLundi 14 Novembre (9h30-12h30): Présentation des principales banques de données et BLAST\nMardi 15 Novembre (9h30-11h00): Alignements Multiples\nMercredi 16 Novembre (9h30-11h00): Introduction à la Phylogénie\nJeudi 17 Novembre (9h30-11h00): Modèles d’évolution\nVendredi 18 Novembre (9h30-11h00): Approches par Maximum de Parcimonie\nLundi 21 Novembre (9h30-11h00): Méthodes de Distance\nMardi 22 Novembre (9h30-11h00): Méthodes de Vraisemblance\nMercredi 23 Novembre (13h30-15h00): Reconstruction Phylogénétique & Approches Bayésiennes\nJeudi 24 Novembre (9h30-11h00): Inférence des Forces Sélectives\nVendredi 25 Novembre (9h30-11h00): Choix des Méthodes et Interprétation\nprogramme complet \ninscription par mail à formation@pasteur.fr (avec le sujet “Phylogénie Moléculaire”) + formulaire \n", "homepage": "https://c3bi.pasteur.fr/training-introduction-a-la-phylogenie-moleculaire-concep…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "ouvert à tous (chercheur,ingénieur, étudiant) mais inscription obligatoire par mail à formation@pasteur.fr (avec le sujet “Phylogénie Moléculaire”) + formulaire \n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/275/?format=api" ] }, { "id": 147, "name": "Linux et script pour la bioinformatique", "shortName": "", "description": "Pour la plupart des tâches communes, le système Linux (libre et gratuit) peut avantageusement remplacer les systèmes d'exploitation propriétaires tels que Windows ou MacOS. Les énormes avantages de Linux sont sa gratuité, son évolution constante et l'inexistence des virus. Ce stage est une initiation à l'utilisation du système d'exploitation Linux et des lignes de commande pour les non informaticiens, ainsi qu'une initiation à l'écriture et l'emploi de scripts (petits programmes) pour faciliter l'analyse de données. Il s'agit pour des débutants ou quasi débutants Linux d'utiliser le système et d'acquérir l'autonomie nécessaire pour résoudre les besoins communs simples d'analyse par la combinaison des méthodes à travers des scripts.\n \n", "homepage": "http://cnrsformation.cnrs.fr/stage-17285-Linux-et-script-pour-la-bioinformatique…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Linux" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "S'acquitter des frais d'inscription, notions de base en informatique : fichiers, répertoires, etc.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/276/?format=api" ] }, { "id": 159, "name": "Analyse de données metabarcoding", "shortName": "", "description": "Nous avons le plaisir de vous annoncer la tenue d'une formation sur l'analyse de données metabarcoding en mai 2018.\nCelle-ci vous proposera : \n- une formation complète à l'outil FROGS sous Galaxy\n- l'intervention de plusieurs experts du domaine avec exposés thématiques et tutoriaux \n- le tout sur 5j, du 14 au 18 mai prochain\nCette semaine thématique est co-organisée entre la cellule bioinformatique de l’ifremer à Brest, la plateforme MIGALE de Jouy et la plate-forme ABiMS de Roscoff qui accueillera la formation.\nRetrouver les détails du programme ici : \nhttp://tiny.ifremer.fr/formation-metabarcoding-2018\nSi cette formation vous intéresse, merci de bien vouloir compléter le formulaire d'inscription (disponible dans le lien ci-dessus).\n----------------------------------------\nWe are pleased to announce a training on metabarcoding data analysis in May 2018.\nThis one will propose to you:\n- complete training in the FROGS tool under Galaxy\n- the intervention of several experts in the field with thematic presentations and tutorials\n- all on 5days , from May 14 to 18\nThis theme week is co-organized with the IFREMER bioinformatic team (Brest) , the Migale bioinformatic platform(Jouy en Josas) and the ABiMS (Roscoff) bioinformatic platform and would take place in Roscoff..\nFind the details of the program here:\nhttp://tiny.ifremer.fr/formation-metabarcoding-2018\nIf you are interested in this training, please complete the registration form (see link above).\nTrainning will be in French with slides in English.\n", "homepage": "http://tiny.ifremer.fr/formation-metabarcoding-2018", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Ecology", "Biodiversity", "Microbial ecology", "NGS Data Analysis", "Metagenomics", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Dates et lieu\nDu 14 au 18 mai 2018\nStation Biologique de Roscoff\nPublic visé\nDoctorants, ITA, chercheurs, enseignants et ingénieurs impliqués dans des projets concrets d’analyse de données de metabarcoding.\nPré-requis\nAvoir une connaissance de l'environnement Galaxy et un projet d'analyse de données de metabarcoding.\nNombre de participants attendus\n18 participants.\nEtant donné le nombre limité de places pour cette formation, une sélection des participants sera réalisée dans le cas où nous aurions reçu plus de 18 candidatures.\nFrais d'inscription\n600€ HT (tarif unique)\nCes frais d'inscription comprennent les déjeuners et diners qui seront pris au restaurant Gulf Stream à Roscoff.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": 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