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            "description": "This course provides an introduction to programming using python. At the end of the training, participants should be able to write simple python programs to handle biological data and to understand more complex programs written by others.\r\nNote : This course in currently available only in french",
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            "name": "Linux For Jedi - April 2022",
            "shortName": "",
            "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.",
            "homepage": "https://southgreenplatform.github.io/trainings/linuxJedi/",
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2022-04-19",
            "end_date": "2022-04-21",
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            "updated_at": "2023-12-04T15:33:22.027184Z",
            "type": "Training course",
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            "end_date": "2023-06-09",
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            "updated_at": "2022-06-02T11:50:50.627601Z",
            "type": "Training course",
            "start_date": "2022-04-04",
            "end_date": "2022-04-05",
            "venue": "",
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            "description": "This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.",
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                "SLURM"
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            "prerequisites": [
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                "Cluster"
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            "maxParticipants": 7,
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            "updated_at": "2023-12-04T15:32:09.166517Z",
            "type": "Training course",
            "start_date": "2023-05-22",
            "end_date": "2023-05-23",
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            "country": "France",
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            "name": "Advanced HPC Trainings 2022",
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            "homepage": "https://southgreenplatform.github.io/trainings//Advanced_HPC/",
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            "updated_at": "2023-12-04T15:31:56.530884Z",
            "type": "Training course",
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            "end_date": "2023-05-19",
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        {
            "id": 275,
            "name": "Introduction à la Phylogénie Moléculaire : CONCEPTS, METHODES ET OUTILS",
            "shortName": "",
            "description": "Le C3BI (Institut Pasteur) propose des cours pour acquérir les notions théoriques de phylogénie et maitriser les outils et logiciels.\nLes cours d’”Introduction à la phylogénie moléculaire” sont ouverts à tous (inscription obligatoire pour les cours et travaux pratiques dans la limite des places disponibles).\nIl est possible de ne s’inscrire que pour la partie théorique. Ces cours sont dispensés en langue française.\nLundi 14 Novembre (9h30-12h30): Présentation des principales banques de données et BLAST\nMardi 15 Novembre (9h30-11h00): Alignements Multiples\nMercredi 16 Novembre (9h30-11h00): Introduction à la Phylogénie\nJeudi 17 Novembre (9h30-11h00): Modèles d’évolution\nVendredi 18 Novembre (9h30-11h00): Approches par Maximum de Parcimonie\nLundi 21 Novembre (9h30-11h00): Méthodes de Distance\nMardi 22 Novembre (9h30-11h00): Méthodes de Vraisemblance\nMercredi 23 Novembre (13h30-15h00): Reconstruction Phylogénétique & Approches Bayésiennes\nJeudi 24 Novembre (9h30-11h00): Inférence des Forces Sélectives\nVendredi 25 Novembre (9h30-11h00): Choix des Méthodes et Interprétation\nprogramme complet \ninscription par mail à formation@pasteur.fr (avec le sujet “Phylogénie Moléculaire”) + formulaire \n",
            "homepage": "https://c3bi.pasteur.fr/training-introduction-a-la-phylogenie-moleculaire-concep…",
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            "type": "Training course",
            "start_date": "2016-11-13",
            "end_date": "2016-11-24",
            "venue": "",
            "city": "Institut Pasteur 25-28 rue du Dr Roux 75015 Paris",
            "country": "",
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            "id": 676,
            "name": "Initiation à Galaxy - session Février 2024",
            "shortName": "",
            "description": "Bilille organise régulièrement des formations d'initiation à l'outil Galaxy d'une journée, destinée aux biologistes et médecins désirant découvrir le traitement bioinformatique de données via une interface conviviale.\r\n\r\nGalaxy est très répandu pour l’analyse de données omiques, telles que données de séquençage ou données de puces à ADN. \r\nC'est l'environnement qui est utilisé lors du cycle de formation “Analyse de données de séquençage à haut-débit”.",
            "homepage": "https://bilille.univ-lille.fr/training/training-offer",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [
                "Galaxy"
            ],
            "prerequisites": [],
            "openTo": "Everyone",
            "accessConditions": "Ouvert en priorité aux participants du cycle Analyse NGS organisé par Bilille.",
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            "updated_at": "2024-12-09T17:34:40.543451Z",
            "type": "Training course",
            "start_date": "2024-02-21",
            "end_date": "2024-02-21",
            "venue": "",
            "city": "Villeneuve d'Ascq",
            "country": "FRANCE",
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            "id": 606,
            "name": "5th workshop Single-Cell : Transcriptomics, Spatial and Long reads",
            "shortName": "5th SincellTE",
            "description": "This workshop focuses on the large-scale study of heterogeneity across individual cells from a genomic, transcriptomic and epigenomic point of view. New technological developments enable the characterization of molecular information at a single cell resolution for large numbers of cells. The high dimensional omics data that these technologies produce raise novel methodological challenges for the analysis. In this regard, dedicated bioinformatics and statistical methods have been developed in order to extract robust information.\r\n\r\nThe workshop aims to provide such methods for engineers and researchers directly involved in functional genomics projects making use of single-cell technologies. A wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nA wide range of single cell topics will be covered in lectures, demonstrations and practical classes. Among others, the areas and issues to be addressed will include the choice of the most appropriate single-cell sequencing technology, the experimental design and the bioinformatics and statistical methods and pipelines. For this edition, new courses/practicals will focus on spatial transcriptomics, cell phenotyping and additional multi-omics.\r\n\r\nRequirements : Participants must have prior experience on NGS data analysis  with everyday use of R and good knowledge of Unix command line. Before the training, participants will be asked to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets with provided pedagogic material.\r\n\r\nIt is not necessary to have personal single-cell data to analyse.\r\n\r\nAll the classes will be taught in English",
            "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=27",
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                "Priced"
            ],
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                "long read sequencing",
                "spatial transcriptomics"
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                "Master",
                "Autre (Diplôme universitaire, école d'ingénieur ...)"
            ],
            "openTo": "Everyone",
            "accessConditions": "Participants must have prior experience on NGS data analysis with everyday use of R and/or Python and good knowledge of Unix command line. Before the training, participants are advised to familiarize themselves with the processing and primary analyses steps of scRNA-seq datasets. \r\nIt is not necessary to have personal single-cell data to analyse.",
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                    "name": "IFB",
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                {
                    "id": 48,
                    "name": "Institut Pasteur",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Institut%20Pasteur/?format=api"
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            "updated_at": "2024-03-20T16:00:20.423462Z",
            "type": "Training course",
            "start_date": "2024-10-20",
            "end_date": "2024-10-25",
            "venue": "Station Biologique",
            "city": "Roscoff",
            "country": "France",
            "geographical_range": "International",
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            "realisation_status": "past",
            "registration_opening": "2024-03-12",
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        {
            "id": 704,
            "name": "Mathematical and Computational Evolutionary Biology (MCEB)",
            "shortName": "MCEB",
            "description": "MCEB will take place in Granada, Spain for its 2025 edition. The meeting will put the emphasis on methods and models for phylogenomics and population genomics. Beyond this year's themes, general concepts, models, methods and algorithms will be presented and discussed, just as in the previous editions of MCEB. As usual, the meeting will bring together researchers originating from various disciplines: mathematics, statistics, computer science, phylogenetics, population genetics, molecular epidemiology, biodiversity and macroevolution... Keynote speakers will\r\nintroduce a field of research and discuss their own work in this field. Afternoon will be for short presentations and posters, with plenty of time for discussions. We will stop early every day, thus leaving time for other activities.\r\n\r\nKEYNOTES:\r\n** Sophie Abby - \"Evolution of biosynthetic pathways in Bacteria\"\r\n** Richard Durbin - \"Population genome variation – going beyond SNPs\"\r\n** Lisa Pokorny Montero - \"Genomic approaches to the study of plant evolution\"\r\n** Harald Ringbauer - \"Advanced ancient DNA analysis\"\r\n** Kristina Wicke - \"Inference of phylogenetic networks\"\r\n** Jaime Huerta-Cepas - \"Evolutionary significance of unknown microbial genes\"",
            "homepage": "https://mceb2025.sciencesconf.org/",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_2269",
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3050",
                "http://edamontology.org/topic_3056"
            ],
            "keywords": [
                "Biostatistics",
                "Biodiversity",
                "Evolution and Phylogeny",
                "Phylogenetics"
            ],
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            "end_date": "2025-05-19",
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            "registration_closing": "2025-04-30",
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