Event List
Handles creating, reading and updating events.
GET /api/event/?format=api&offset=480&ordering=-city
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Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\n\r\nAprès une introduction à la transcriptomique, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité des données transcriptomiques,\r\n- aligner des données transcriptomiques sur un génome de référence,\r\n- estimer le nombre de séquences par gènes,\r\n- construire et faire une analyse d’expression différentielle des gènes\r\n- faire une analyse de l’enrichissement fonctionnel des gènes différentiellement exprimés", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_3170", "http://edamontology.org/topic_0203", "http://edamontology.org/topic_3308", "http://edamontology.org/topic_1775" ], "keywords": [ "Galaxy", "RNA-seq", "Transcriptomics (RNA-seq)" ], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-06-06T08:09:16.432369Z", "type": "Training course", "start_date": "2024-07-18", "end_date": "2024-07-18", "venue": "Bâtiment Turing, Salle A009", "city": "Clermont-Ferrand", "country": "France", "geographical_range": "Local", "trainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/522/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/807/?format=api" ], "trainingMaterials": [ { "id": 144, "name": "Reference-based RNA-Seq data analysis with Galaxy", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Reference-based%20RNA-Seq%20data%20analysis%20with%20Galaxy/?format=api" }, { "id": 145, "name": "Introduction to Transcriptomics", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Introduction%20to%20Transcriptomics/?format=api" } ], "computingFacilities": [], "realisation_status": "past", "registration_opening": "2024-06-06", "registration_closing": "2024-06-20", "registration_status": "closed", "courseMode": "Onsite" }, { "id": 188, "name": "International Symposium on Environmental and Agronomical Genomics", "shortName": "", "description": "This symposium takes stock of recent contributions of genomics in environmental and agronomic biology.", "homepage": "https://www.france-genomique.org/symposium2018/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/france_bioinformatique.jpg", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Conference", "start_date": "2018-11-05", "end_date": "2018-11-07", "venue": "", "city": "Cité Internationale Universitaire de Paris. 17 Boulevard Jourdan – 75014 Paris", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 180, "name": "Elixir Training: Plant Genome Assembly and Annotation", "shortName": "", "description": "The course is aimed at researchers interested in learning more about genome assembly and annotation", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" }, { "id": 6, "name": "Elixir-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir-FR/?format=api" }, { "id": 50, "name": "CIRAD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CIRAD/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/elixir_node_france_0_0.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-09-24", "end_date": "2018-09-28", "venue": "", "city": "Cirad Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 395, "name": "« STATIMAGE», Statistiques pour l’imagerie de microscopie", "shortName": "", "description": "\n\n\nL’objectif de cette formation est de donner aux ingénieurs des plates-formes d’imagerie cellulaire et aux personnes qui utilisent ces technologies, des outils statistiques adaptés aux problématiques du domaine. Dans le but de traiter les grandes séries d’images acquises selon les diverses modalités, il est proposé de renforcer la maîtrise des outils statistiques pour une analyse pertinente mais aussi pour une optimisation des acquisitions.\nLa formation se déroulera du lundi midi au mercredi après-midi pour 2 demi-journées de cours (rappel des notions de bases, modélisation, plans d’expériences) et 3 demi-journées de travaux pratiques/dirigés.\n\n\n\n", "homepage": "https://france-bioimaging.org/fr/events/statimage-statistiques-pour-limagerie-de…", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "Biostatistics", "Image analysis", "Information retrieval", "Descriptive statistics", "Multivariate analyses" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-18", "end_date": "2017-06-20", "venue": "", "city": "CIEP, Sèvres", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 88, "name": "« STATIMAGE», Statistiques pour l’imagerie de microscopie", "shortName": "", "description": "", "homepage": "https://france-bioimaging.org/fr/events/statimage-statistiques-pour-limagerie-de…", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-06-18", "end_date": "2017-06-20", "venue": "", "city": "CIEP, Sèvres", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 213, "name": "Genopole Summer School 2019", "shortName": "", "description": "Bioinformatic and Biostatistic tools in medical genomics", "homepage": "https://www.genopole.fr/spip.php", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/genopolelogo_0_0.jpg", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2019-06-24", "end_date": "2019-06-28", "venue": "", "city": "Châteauform' Seine Port (77)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 99, "name": "Genopole Summer School", "shortName": "", "description": "Bioinformatic and Biostatistic tools in medical genomics", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/genopolelogo.jpg", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2017-07-04", "end_date": "2017-07-07", "venue": "", "city": "Châteauform' Seine Port (77)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 178, "name": "Genopole Summer School 2018", "shortName": "", "description": "Bioinformatic and Biostatistic tools in medical genomics", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/genopolelogo_0.jpg", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-06-25", "end_date": "2018-06-29", "venue": "", "city": "Châteauform' Seine Port (77)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 182, "name": "Installing and Managing a High-Performance Computing (HPC) Cluster ", "shortName": "", "description": "This course ran for 5 days covering all the concepts necessary to install and manage a high-performance computing (HPC) cluster. ", "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-09-30", "end_date": "2018-10-04", "venue": "", "city": "CERAAS, Thiès (Sénégal)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 183, "name": "Analyse de données NGS dédiée à la génomique végétale en Afrique de l'Ouest", "shortName": "", "description": "Cette formation présente les technologies de séquençages et les différentes analyses possibles pour exploiter ces données.", "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-10-03", "end_date": "2018-10-11", "venue": "", "city": "CERAAS, Thiès (Sénégal)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 385, "name": "Installing and Managing a High-Performance Computing (HPC) Cluster ", "shortName": "", "description": "This course ran for 5 days covering all the concepts necessary to install and manage a high-performance computing (HPC) cluster. During this course, a HPC cluster were installed at CERAAS (Thiès, Sénégal) by the participants, IT managers from western africa (IRD, ISRA, CERAAS).\n", "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 13, "name": "Formation permanente IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=api" }, { "id": 14, "name": "IAVAO", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IAVAO/?format=api" } ], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-09-30", "end_date": "2018-10-04", "venue": "", "city": "CERAAS, Thiès (Sénégal)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 386, "name": "Analyse de données NGS dédiée à la génomique végétale en Afrique de l'Ouest", "shortName": "", "description": "Les avancées spectaculaires des technologies de séquençage de 2ème et 3ème génération sont une véritable révolution pour la recherche en science de la vie. Ces techniques permettent le séquençage en quelques semaines de génomes entiers d’organismes complexes, générant une explosion du volume de données génomiques. \n\t\t\tToutefois l’analyse de telles masses d’informations nécessite des compétences en linux, en bioinformatique ainsi qu’une bonne connaissance et maîtrise de nombreux algorithmes et logiciels. La réalisation de ces analyses nécessite également l’accès à des ressources de calcul telles que des clusters de calcul. \n\t\t\tLe DP IAVAO et le LMI LAPSE en collaboration avec la plateforme bioinformatique South Green organisent, du 4 au 12 Octobre 2018, une formation en bioinformatique dédié à l’analyse de données de séquençage dont les objectifs sont de présenter les technologies de séquençage et les différentes analyses bioinformatiques pour exploiter au mieux cette masse de données afin de pouvoir réaliser des projets génomiques à grande échelle sur leurs modèles (plantes et pathogènes).\nPrérequis\nAucun\n\nProgramme\nLinux et lignes de commandes \nInitiation à l’utilisation du cluster du CERAAS \nPrésentation des technologies de séquençages \nAppel de SNP sur des données WGS \nPost analyse de données de SNPs\nOutils Genome Harvest \n\n\nObjectifs\nAprès la formation, les participants seront capables de :\nse connecter à un cluster Linux\nlancer des programmes/analyses bioinformatiques\ndéfinir les étapes pour analyser des données de séquençage\nanalyser des données de séquençage\nutiliser des gestionnaires de workflow tel que Galaxy ou TOGGLe\n\n\nInstructors\nChristine Tranchant (CT) - christine.tranchant@ird.fr\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat (BP) - bertrand.pitollat@cirad.fr\nFrançois Sabot (SB) - francois.sabot@ird.fr\nManuel Ruiz (MR) - manuel.ruiz@cirad.fr\nGautier Sarah (GS) - gautier.sarah@cirad.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 14, "name": "IAVAO", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IAVAO/?format=api" } ], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-10-03", "end_date": "2018-10-11", "venue": "", "city": "CERAAS, Thiès (Sénégal)", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 387, "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe", "shortName": "", "description": "This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.\n \nPrerequisites\nPrior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical\n\nProgram\nWhy using a workflow manager to analyse data ?\nHow to perform an analysis ?\nHow to create your own workflow ?\nHow to execute it?\nUse case\n\n\nLearning objectives\nExplaining what Workflow Managers are,\n\tin which way they differ from each other.\nHow you can use them in your research.\nCreating your own workflow\nAnalysing your NGS data with Galaxy and TOGGLe\n\n\nInstructors\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\nSebastien Ravel (SR) - sebastien.ravel@cirad.fr\nChristine Tranchant (CT) - christine.tranchant@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-22", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 388, "name": "RNASeq analyses (using Galaxy and TOGGLe)", "shortName": "", "description": "This course offers an introduction to RNASeq analyses using two different workflow management systems: Galaxy and TOGGLe. This includes reference-based mapping, estimates of transcript levels, differential expression (DE) analyses, visualization of statistics results.\nPrerequisites\nWorkflow management system (Galaxy, TOGGLe)\n\nProgram\nMapping of RNASeq against a transcriptome reference with kallisto (Galaxy)\nMapping of RNASeq against an annotated genome reference with TopHat (TOGGLe)\nDifferential expression analysis using EdgeR and DESeq2\nPlots, clustering, co-expression network: degust, WGCNA\n\n\nLearning objectives\nManipulate packages/tools available for searching DE genes\nThink about different normalisation methods\nDetect differentially expressed genes\nCompare results between two approaches\n\n\nInstructors\nAlexis Dereeper - alexis.dereeper@ird.fr\nSebastien Cunnac - sebastien.cunnac@ird.fr\nSebastien Ravel - sebastien.ravel@cirad.fr\nChristine Tranchant - christine.tranchant@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//rnaseq/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-15", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 155, "name": " Linux For Jedi", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-12", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 162, "name": "RNASeq analyses (using Galaxy and TOGGLe)", "shortName": "", "description": "This course offers an introduction to RNASeq analyses using two different workflow management systems: Galaxy and TOGGLe", "homepage": "https://southgreenplatform.github.io/trainings//rnaseq/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-15", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 389, "name": "Metabarcoding analyses (using FROGS in Galaxy and Phyloseq)", "shortName": "", "description": "This course offers an introduction to metabarcoding analyses at two different levels/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.\nPrerequisites\nGalaxy, R knowledge\n\nProgram\nIntroduction to metagenomics and metabarcoding\nPre-processing, Clustering, taxonomic affiliation (FROGS)\nHandling and visualizing OTU table using PhyloSeq R package (PhyloSeq)\n\n\nLearning objectives\nManipulate tools available for metabarcoding analysis\nStudy sample diversity by using NGS and post-NGS analysis tools\nVisualize diversity metrics in metabarcoding approach\n\n\nInstructors\nJulie Orjuela - julie.orjuela@ird.fr\nFlorentin Constancias - florentin.constancias@cirad.fr\nAlexis Dereeper - alexis.dereeper@ird.fr\n\n \n", "homepage": "https://southgreenplatform.github.io/trainings//metabarcoding/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-04-22", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 384, "name": "Introduction to High-performance computing", "shortName": "", "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-14", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null }, { "id": 165, "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe", "shortName": "", "description": "This course provides introduction to workfow managers to quickly develop and run their own pipelines.", "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/150x150.png", "updated_at": "2022-06-02T11:50:50.627601Z", "type": "Training course", "start_date": "2018-03-22", "end_date": null, "venue": "", "city": "Centre IRD, Montpellier", "country": "", "geographical_range": "", "trainers": [], "trainingMaterials": [], "computingFacilities": [], "realisation_status": "past", "registration_opening": null, "registration_closing": null, "registration_status": "unknown", "courseMode": null } ] }
