Event Instance

HTTP 200 OK
Allow: GET, PUT, PATCH, DELETE, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "id": 809,
    "name": "Introduction to single-cell RNAseq analysis",
    "shortName": "Introduction to single-cell RNAseq analysis",
    "description": "Objectives\r\n- Understand and learn the main steps of scRNA-seq data analysis, up to marker gene detection and cell type identification.\r\n- Be able to use the Seurat package on a small test dataset, from count matrices to clustering and cluster annotation.\r\n- Understand the basics of the analysis in order to apply them to one’s own dataset.\r\n\r\nCourse Content\r\nI. Introduction\r\n- Single-cell RNA sequencing\r\n- From raw sequencing data to count matrices\r\n- Software tools\r\n\r\nII. Preprocessing of the expression matrix (Theory and Practice)\r\n- Quality control\r\n- Normalization\r\n- Dimensionality reduction (HVG, PCA, UMAP)\r\n- Detection of expression biases\r\n\r\nIII. Annotation (Theory and Practice)\r\n- Clustering\r\n- Marker genes\r\n- Cell type identification\r\n- Analysis of marker gene lists with the R package ClusterProfiler\r\n\r\nIV. Practical Workshop “Bring your own data”\r\n- Semi-autonomous execution of primary analysis on learners’ own data",
    "homepage": "https://pf-bird.univ-nantes.fr/training/singlecell/",
    "is_draft": false,
    "costs": [
        "Priced"
    ],
    "topics": [],
    "keywords": [],
    "prerequisites": [],
    "openTo": "Everyone",
    "accessConditions": "1. Good knowledge of R or having completed the training “Bioanalysis Training: Introduction to the R Programming Language.”\r\n\r\n2. Have your own data or data of interest collected from public databases (cellXgene, Single Cell Portal, …).",
    "maxParticipants": 20,
    "contacts": [],
    "elixirPlatforms": [],
    "communities": [],
    "sponsoredBy": [],
    "organisedByOrganisations": [],
    "organisedByTeams": [
        {
            "id": 16,
            "name": "BiRD",
            "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api"
        }
    ],
    "logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg",
    "updated_at": "2026-09-03T15:09:40.096491Z",
    "type": "Training course",
    "start_date": "2026-10-19",
    "end_date": "2026-10-21",
    "venue": "",
    "city": "Nantes",
    "country": "",
    "geographical_range": "",
    "trainers": [],
    "trainingMaterials": [],
    "computingFacilities": [],
    "realisation_status": "future",
    "registration_opening": "2026-09-01",
    "registration_closing": "2026-10-02",
    "registration_status": "open",
    "courseMode": "Onsite"
}