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{
    "id": 389,
    "name": "Metabarcoding analyses (using FROGS in Galaxy and Phyloseq)",
    "shortName": "",
    "description": "This course offers an introduction to metabarcoding analyses at two different levels/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.\nPrerequisites\nGalaxy, R knowledge\n\nProgram\nIntroduction to metagenomics and metabarcoding\nPre-processing, Clustering, taxonomic affiliation (FROGS)\nHandling and visualizing OTU table using PhyloSeq R package (PhyloSeq)\n\n\nLearning objectives\nManipulate tools available for metabarcoding analysis\nStudy sample diversity by using NGS and post-NGS analysis tools\nVisualize diversity metrics in metabarcoding approach​\n\n\nInstructors\nJulie Orjuela - julie.orjuela@ird.fr\nFlorentin Constancias - florentin.constancias@cirad.fr\nAlexis Dereeper - alexis.dereeper@ird.fr\n\n \n",
    "homepage": "https://southgreenplatform.github.io/trainings//metabarcoding/",
    "is_draft": false,
    "costs": [
        "Free"
    ],
    "topics": [],
    "keywords": [],
    "prerequisites": [],
    "openTo": "Internal personnel",
    "accessConditions": "",
    "maxParticipants": null,
    "contacts": [],
    "elixirPlatforms": [],
    "communities": [],
    "sponsoredBy": [],
    "organisedByOrganisations": [],
    "organisedByTeams": [
        {
            "id": 24,
            "name": "South Green",
            "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
        }
    ],
    "logo_url": "",
    "updated_at": "2022-06-02T11:50:50.627601Z",
    "type": "Training course",
    "start_date": "2018-04-22",
    "end_date": null,
    "venue": "",
    "city": "Centre IRD, Montpellier",
    "country": "",
    "geographical_range": "",
    "trainers": [],
    "trainingMaterials": [],
    "computingFacilities": [],
    "realisation_status": "past",
    "registration_opening": null,
    "registration_closing": null,
    "registration_status": "unknown",
    "courseMode": null
}