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"id": 273,
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"description": "Nous avons le plaisir de vous annoncer la tenue d'une formation sur l'analyse de données metabarcoding en mai 2018.\nCelle-ci vous proposera : \n- une formation complète à l'outil FROGS sous Galaxy\n- l'intervention de plusieurs experts du domaine avec exposés thématiques et tutoriaux \n- le tout sur 5j, du 14 au 18 mai prochain\nCette semaine thématique est co-organisée entre la cellule bioinformatique de l’ifremer à Brest, la plateforme MIGALE de Jouy et la plate-forme ABiMS de Roscoff qui accueillera la formation.\nRetrouver les détails du programme ici : \nhttp://tiny.ifremer.fr/formation-metabarcoding-2018\nSi cette formation vous intéresse, merci de bien vouloir compléter le formulaire d'inscription (disponible dans le lien ci-dessus).\n----------------------------------------\nWe are pleased to announce a training on metabarcoding data analysis in May 2018.\nThis one will propose to you:\n- complete training in the FROGS tool under Galaxy\n- the intervention of several experts in the field with thematic presentations and tutorials\n- all on 5days , from May 14 to 18\nThis theme week is co-organized with the IFREMER bioinformatic team (Brest) , the Migale bioinformatic platform(Jouy en Josas) and the ABiMS (Roscoff) bioinformatic platform and would take place in Roscoff..\nFind the details of the program here:\nhttp://tiny.ifremer.fr/formation-metabarcoding-2018\nIf you are interested in this training, please complete the registration form (see link above).\nTrainning will be in French with slides in English.\n",
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{
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"name": "FAIR_bioinfo_@_AuBi",
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"homepage": "https://mesocentre.uca.fr/actualites/formation-2022-pratiques-fair-en-bioinformatique",
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{
"id": 554,
"name": "Graphiques sous R avec ggplot2 / Graphics with R-ggplot2 (2023 session )",
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"description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.",
"homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/",
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"updated_at": "2026-03-26T14:14:19.457285Z",
"type": "Training course",
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"end_date": "2026-12-11",
"venue": "",
"city": "Evry",
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{
"id": 797,
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"id": 16,
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"updated_at": "2026-03-27T10:15:52.835260Z",
"type": "Training course",
"start_date": "2026-05-19",
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{
"id": 798,
"name": "Formation metabarcoding ABiMS SeBiMER",
"shortName": "Formation metabarcoding ABiMS SeBiMER",
"description": "Le séquençage à haut débit des amplicons de marqueurs taxonomiques tels l’ADN ribosomique, les gènes COI/COX ou les ITS a ouvert de nouveaux horizons dans l’étude des communautés de macro et micro-organismes et l’étude des écosystèmes.\r\n\r\nLe but de cette formation est, d’une part, d’introduire les concepts clés liés aux analyses de metabarcoding et de les illustrer au moyen de cas concrets d’analyse et, d’autre part, de former les utilisateurs aux traitements de données de metabarcoding au travers de l’usage du logiciel SAMBA (Noël et al., in submission).",
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{
"id": 747,
"name": "Introduction to Linux",
"shortName": "Introduction to Linux - BiRD",
"description": "Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell",
"homepage": "https://pf-bird.univ-nantes.fr/training/linux/",
"is_draft": false,
"costs": [
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"topics": [
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"keywords": [],
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],
"logo_url": "https://bird.univ-nantes.io/website/images/logo/logo.svg",
"updated_at": "2026-03-31T08:47:45.957937Z",
"type": "Training course",
"start_date": "2025-10-20",
"end_date": "2025-10-20",
"venue": "Faculté de Pharmacie - Salle 450, 4ème étage",
"city": "Nantes",
"country": "",
"geographical_range": "National",
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"registration_opening": null,
"registration_closing": "2025-10-15",
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},
{
"id": 799,
"name": "Construction and analysis of eukaryotic pangenome graphs - 30 novembre 2026",
"shortName": "",
"description": "This training session is organized by the Genotoul-Bioinfo platform. This 2 days long course is dedicated to the construction and the analysis of eukaryotic pangenome graphs.\r\n\r\nWe will first present the concept of graph-based pangenome, then build one. We will then apply several tools for its analysis: use annotation, call variants, extract sub-graphs, visualize the graph, map reads, genotype individuals, and perform a GWAS on the graph. The different formats will also be presented.\r\n\r\nBy the end of the course, trainees will be familiar with the topic, and able to run the major tools made to build an exploit a pangenome graph.",
"homepage": "https://bioinfo.genotoul.fr/index.php/events/pangenome/",
"is_draft": false,
"costs": [
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"INRAE for INRAE's staff: 300 € no VAT charged",
"Academic non-INRAE for academic but non-INRAE: 340 € + 20% taxes (TVA)"
],
"topics": [
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"http://edamontology.org/topic_0625"
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"keywords": [
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"prerequisites": [
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"openTo": "Everyone",
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"id": 703,
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"id": 65,
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{
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},
{
"id": 792,
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"id": 708,
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"id": 735,
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{
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"venue": "Access to the INRAE center reception\r\n By car\r\n\r\n Take the N118 from the Paris rotary Porte de Saint-Cloud > Pont de Sèvres > Follow direction Bordeaux/Nantes – take exit 6A Jouy-en-Josas/Bièvres\r\n Take the N12 from Plaisir > Follow direction Paris exit 1 towards the D53\r\n Take the A12 Rambouillet > Jouy – take exit 2 via the D446\r\n\r\n By the RER (train to the suburbs)\r\n\r\nRER C Line: Get off at the Jouy-en-Josas station. The research center is a 15 minute walk (you must walk towards the town hall (Mairie de Jouy).\r\n\r\n From Chatelet-Les Halles, take the RER B line until the Massy-Palaiseau station (32 min.) then take the RER C line CIME train (14 min.)\r\n From Versailles-Chantier RER C station take the VICK or VITY train (8 min.)\r\n From the Bibliothèque François Mitterand RER C station, take the CIME train (1 hour)",
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"id": 706,
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{
"id": 707,
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"prerequisites": [
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"openTo": "Everyone",
"accessConditions": "Avoir un compte sur le cluster de calcul du Mésocentre Clermont Auvergne (faire une demande le cas échéant sur le site\r\nhttps://hub.mesocentre.uca.fr)\r\nVENIR AVEC UN ORDINATEUR PORTABLE muni d’une connexion à Eduroam opérationnelle.",
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{
"id": 710,
"name": "Principes FAIR & Git Initiation",
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"id": 722,
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{
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"id": 726,
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