Best practices in Bioinformatics
DifficultyLevel
OpenTo
Everyone
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Description
Objectives
- Understand and implement the principles of reproducible science in analysis and development projects
- Acquire basic commands necessary for optimal use of a HPC cluster

Course Content
- Introduction to reproducibility
- Best practices on code history and sharing: Git
- Software environment : conda/mamba
- Presentation of a HPC cluster
- Introduction to workflows using Snakemake