Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS Pommier C., Michotey C., Cornut G., Roumet P., Duchêne E., Flores R., Lebreton A., Alaux M., Durand S., Kimmel E., Letellier T., Merceron G., Laine M., Guerche C., Loaec M., Steinbach D., Laporte M. A., Arnaud E., Quesneville H., Adam-Blondon A. F.. 2019, Plant Phenomics. 10.34133/2019/1671403
RepetDB: a unified resource for transposable element references Amselem Joëlle, Cornut Guillaume, Choisne Nathalie, Alaux Michael, Alfama-Depauw Françoise, Jamilloux Véronique, Maumus Florian, Letellier Thomas, Luyten Isabelle, Pommier Cyril, Adam-Blondon Anne-Françoise, Quesneville Hadi. 2019, Mobile DNA. 10.1186/s13100-019-0150-y
Mining Plant Genomic and Genetic Data Using the GnpIS Information System Adam-Blondon A.-F., Alaux M., Durand S., Letellier T., Merceron G., Mohellibi N., Pommier C., Steinbach D., Alfama F., Amselem J., Charruaud D., Choisne N., Flores R., Guerche C., Jamilloux V., Kimmel E., Lapalu N., Loaec M., Michotey C., Quesneville H.. 2017, Methods in Molecular Biology. 10.1007/978-1-4939-6658-5_5
transPLANT Resources for Triticeae Genomic Data Spannagl Manuel, Alaux Michael, Lange Matthias, Bolser Daniel M., Bader Kai C., Letellier Thomas, Kimmel Erik, Flores Raphael, Pommier Cyril, Kerhornou Arnaud, Walts Brandon, Nussbaumer Thomas, Grabmuller Christoph, Chen Jinbo, Colmsee Christian, Beier Sebastian, Mascher Martin, Schmutzer Thomas, Arend Daniel, Thanki Anil, Ramirez‐Gonzalez Ricardo, Ayling Martin, Ayling Sarah, Caccamo Mario, Mayer Klaus F.X., Scholz Uwe, Steinbach Delphine, Quesneville Hadi, Kersey Paul J.. 2016, The Plant Genome. 10.3835/plantgenome2015.06.0038
GnpIS: an information system to integrate genetic and genomic data from plants and fungi Steinbach Delphine, Alaux Michael, Amselem Joelle, Choisne Nathalie, Durand Sophie, Flores Raphaël, Keliet Aminah-Olivia, Kimmel Erik, Lapalu Nicolas, Luyten Isabelle, Michotey Célia, Mohellibi Nacer, Pommier Cyril, Reboux Sébastien, Valdenaire Dorothée, Verdelet Daphné, Quesneville Hadi. 2013, Database. 10.1093/database/bat058
PASTEC: An Automatic Transposable Element Classification Tool Hoede Claire, Arnoux Sandie, Moisset Mark, Chaumier Timothée, Inizan Olivier, Jamilloux Véronique, Quesneville Hadi. 2014, PLoS ONE. 10.1371/journal.pone.0091929
Considering Transposable Element Diversification in De Novo Annotation Approaches Flutre Timothée, Duprat Elodie, Feuillet Catherine, Quesneville Hadi. 2011, PLoS ONE. 10.1371/journal.pone.0016526
Combined Evidence Annotation of Transposable Elements in Genome Sequences Quesneville Hadi, Bergman Casey M., Andrieu Olivier, Autard Delphine, Nouaud Danielle, Ashburner Michael, Anxolabehere Dominique. 2005, PLoS Computational Biology. 10.1371/journal.pcbi.0010022
Detection of New Transposable Element Families in Drosophila melanogaster and Anopheles gambiae Genomes Quesneville Hadi, Nouaud Danielle, Anxolab�h�re Dominique. 2003, Journal of Molecular Evolution. 10.1007/s00239-003-0007-2
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data Alaux Michael, International Wheat Genome Sequencing Consortium, Rogers Jane, Letellier Thomas, Flores Raphaël, Alfama Françoise, Pommier Cyril, Mohellibi Nacer, Durand Sophie, Kimmel Erik, Michotey Célia, Guerche Claire, Loaec Mikaël, Lainé Mathilde, Steinbach Delphine, Choulet Frédéric, Rimbert Hélène, Leroy Philippe, Guilhot Nicolas, Salse Jérôme, Feuillet Catherine, Paux Etienne, Eversole Kellye, Adam-Blondon Anne-Françoise, Quesneville Hadi. 2018, Genome Biology. 10.1186/s13059-018-1491-4