ACDtool: a web-server for the generic analysis of large data sets of counts Claverie Jean-Michel, Ta Thi Ngan. 2019, Bioinformatics. 10.1093/bioinformatics/bty640
Validation of predicted anonymous proteins simply using Fisher’s exact test Claverie Jean-Michel, Santini Sébastien. 2021, Bioinformatics Advances. 10.1093/bioadv/vbab034
Metagenomic survey of the microbiome of ancient Siberian permafrost and modern Kamchatkan cryosols Rigou Sofia, Christo-Foroux Eugène, Santini Sébastien, Goncharov Artemiy, Strauss Jens, Grosse Guido, Fedorov Alexander N, Labadie Karine, Abergel Chantal, Claverie Jean-Michel. 2022, microLife. 10.1093/femsml/uqac003
Characterization of <i>Mollivirus kamchatka</i> , the First Modern Representative of the Proposed <i>Molliviridae</i> Family of Giant Viruses Christo-Foroux Eugene, Alempic Jean-Marie, Lartigue Audrey, Santini Sebastien, Labadie Karine, Legendre Matthieu, Abergel Chantal, Claverie Jean-Michel. 2020, Journal of Virology. 10.1128/JVI.01997-19
Pandoravirus Celtis Illustrates the Microevolution Processes at Work in the Giant Pandoraviridae Genomes Legendre Matthieu, Alempic Jean-Marie, Philippe Nadège, Lartigue Audrey, Jeudy Sandra, Poirot Olivier, Ta Ngan Thi, Nin Sébastien, Couté Yohann, Abergel Chantal, Claverie Jean-Michel. 2019, Frontiers in Microbiology. 10.3389/fmicb.2019.00430
New genomic data and analyses challenge the traditional vision of animal epithelium evolution Belahbib Hassiba, Renard Emmanuelle, Santini Sébastien, Jourda Cyril, Claverie Jean-Michel, Borchiellini Carole, Le Bivic André. 2018, BMC Genomics. 10.1186/s12864-018-4715-9
Complete mitochondrial genome sequence of the freshwater diatom <i>Asterionella formosa</i> Villain Adrien, Kojadinovic Mila, Puppo Carine, Prioretti Laura, Hubert Pierre, Zhang Yizhi, Grégori Gérald, Roulet Alain, Roques Céline, Claverie Jean-Michel, Gontero Brigitte, Blanc Guillaume. 2017, Mitochondrial DNA Part B. 10.1080/23802359.2017.1285210
Comparative Genomics of Chrysochromulina Ericina Virus and Other Microalga-Infecting Large DNA Viruses Highlights Their Intricate Evolutionary Relationship with the Established Mimiviridae Family Gallot-Lavallée Lucie, Blanc Guillaume, Claverie Jean-Michel. 2017, Journal of Virology. 10.1128/JVI.00230-17
Noumeavirus replication relies on a transient remote control of the host nucleus Fabre Elisabeth, Jeudy Sandra, Santini Sébastien, Legendre Matthieu, Trauchessec Mathieu, Couté Yohann, Claverie Jean-Michel, Abergel Chantal. 2017, Nature Communications. 10.1038/ncomms15087
Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages Lescot Magali, Hingamp Pascal, Kojima Kenji K, Villar Emilie, Romac Sarah, Veluchamy Alaguraj, Boccara Martine, Jaillon Olivier, Iudicone Daniele, Bowler Chris, Wincker Patrick, Claverie Jean-Michel, Ogata Hiroyuki. 2016, The ISME Journal. 10.1038/ismej.2015.192
Distribution patterns of microbial communities in ultramafic landscape: a metagenetic approach highlights the strong relationships between diversity and environmental traits Bordez L., Jourand P., Ducousso M., Carriconde F., Cavaloc Y., Santini S., Claverie J. M., Wantiez L., Leveau A., Amir H.. 2016, Molecular Ecology. 10.1111/mec.13621
Provirophages in the Bigelowiella genome bear testimony to past encounters with giant viruses Blanc Guillaume, Gallot-Lavallée Lucie, Maumus Florian. 2015, Proceedings of the National Academy of Sciences. 10.1073/pnas.1506469112
Global Analysis of Chlorella variabilis NC64A mRNA Profiles during the Early Phase of Paramecium bursaria Chlorella Virus-1 Infection Rowe Janet M., Jeanniard Adrien, Gurnon James R., Xia Yuannan, Dunigan David D., Van Etten James L., Blanc Guillaume. 2014, PLoS ONE. 10.1371/journal.pone.0090988
Deep RNA Sequencing Reveals Hidden Features and Dynamics of Early Gene Transcription in Paramecium bursaria Chlorella Virus 1 Blanc Guillaume, Mozar Michael, Agarkova Irina V., Gurnon James R., Yanai-Balser Giane, Rowe Janet M., Xia Yuannan, Riethoven Jean-Jack, Dunigan David D., Van Etten James L.. 2014, PLoS ONE. 10.1371/journal.pone.0090989
Towards defining the chloroviruses: a genomic journey through a genus of large DNA viruses Jeanniard Adrien, Dunigan David D, Gurnon James R, Agarkova Irina V, Kang Ming, Vitek Jason, Duncan Garry, McClung O William, Larsen Megan, Claverie Jean-Michel, Van Etten James L, Blanc Guillaume. 2013, BMC Genomics. 10.1186/1471-2164-14-158
Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay Bittner Lucie, Gobet Angélique, Audic Stéphane, Romac Sarah, Egge Elianne S., Santini Sébastien, Ogata Hiroyuki, Probert Ian, Edvardsen Bente, de Vargas Colomban. 2013, Molecular Ecology. 10.1111/mec.12108
Vampires in the oceans: predatory cercozoan amoebae in marine habitats Berney Cédric, Romac Sarah, Mahé Frédéric, Santini Sébastien, Siano Raffaele, Bass David. 2013, The ISME Journal. 10.1038/ismej.2013.116
Giant DNA Virus Mimivirus Encodes Pathway for Biosynthesis of Unusual Sugar 4-Amino-4,6-dideoxy-d-glucose (Viosamine) Piacente Francesco, Marin Margherita, Molinaro Antonio, De Castro Cristina, Seltzer Virginie, Salis Annalisa, Damonte Gianluca, Bernardi Cinzia, Claverie Jean-Michel, Abergel Chantal, Tonetti Michela. 2012, Journal of Biological Chemistry. 10.1074/jbc.M111.314559
Translation in Giant Viruses: A Unique Mixture of Bacterial and Eukaryotic Termination Schemes Jeudy Sandra, Abergel Chantal, Claverie Jean-Michel, Legendre Matthieu. 2012, PLoS Genetics. 10.1371/journal.pgen.1003122
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation Blanc Guillaume, Agarkova Irina, Grimwood Jane, Kuo Alan, Brueggeman Andrew, Dunigan David D, Gurnon James, Ladunga Istvan, Lindquist Erika, Lucas Susan, Pangilinan Jasmyn, Pröschold Thomas, Salamov Asaf, Schmutz Jeremy, Weeks Donald, Yamada Takashi, Lomsadze Alexandre, Borodovsky Mark, Claverie Jean-Michel, Grigoriev Igor V, Van Etten James L. 2012, Genome Biology. 10.1186/gb-2012-13-5-r39
The Conserved Candida albicans CA3427 Gene Product Defines a New Family of Proteins Exhibiting the Generic Periplasmic Binding Protein Structural Fold Santini Sébastien, Claverie Jean-Michel, Mouz Nicolas, Rousselle Tristan, Maza Caroline, Monchois Vincent, Abergel Chantal. 2011, PLoS ONE. 10.1371/journal.pone.0018528
Breaking the 1000-gene barrier for Mimivirus using ultra-deep genome and transcriptome sequencing Legendre Matthieu, Santini Sébastien, Rico Alain, Abergel Chantal, Claverie Jean-Michel. 2011, Virology Journal. 10.1186/1743-422X-8-99
The <i>Chlorella variabilis</i> NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex Blanc Guillaume, Duncan Garry, Agarkova Irina, Borodovsky Mark, Gurnon James, Kuo Alan, Lindquist Erika, Lucas Susan, Pangilinan Jasmyn, Polle Juergen, Salamov Asaf, Terry Astrid, Yamada Takashi, Dunigan David D., Grigoriev Igor V., Claverie Jean-Michel, Van Etten James L.. 2010, The Plant Cell. 10.1105/tpc.110.076406
Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell von Dassow Peter, Ogata Hiroyuki, Probert Ian, Wincker Patrick, Da Silva Corinne, Audic Stéphane, Claverie Jean-Michel, de Vargas Colomban. 2009, Genome Biology. 10.1186/gb-2009-10-10-r114
Remarkable sequence similarity between the dinoflagellate-infecting marine girus and the terrestrial pathogen African swine fever virus Ogata Hiroyuki, Toyoda Kensuke, Tomaru Yuji, Nakayama Natsuko, Shirai Yoko, Claverie Jean-Michel, Nagasaki Keizo. 2009, Virology Journal. 10.1186/1743-422X-6-178
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus Monier Adam, Pagarete António, de Vargas Colomban, Allen Michael J., Read Betsy, Claverie Jean-Michel, Ogata Hiroyuki. 2009, Genome Research. 10.1101/gr.091686.109
Mimivirus and Mimiviridae: Giant viruses with an increasing number of potential hosts, including corals and sponges Claverie Jean-Michel, Grzela Renata, Lartigue Audrey, Bernadac Alain, Nitsche Serge, Vacelet Jean, Ogata Hiroyuki, Abergel Chantal. 2009, Journal of Invertebrate Pathology. 10.1016/j.jip.2009.03.011
The polyadenylation site of Mimivirus transcripts obeys a stringent ‘hairpin rule’ Byrne Deborah, Grzela Renata, Lartigue Audrey, Audic Stéphane, Chenivesse Sabine, Encinas Stéphanie, Claverie Jean-Michel, Abergel Chantal. 2009, Genome Research. 10.1101/gr.091561.109
Brucella microti: the genome sequence of an emerging pathogen Audic Stéphane, Lescot Magali, Claverie Jean-Michel, Scholz Holger C. 2009, BMC Genomics. 10.1186/1471-2164-10-352
Phylogeny.fr: robust phylogenetic analysis for the non-specialist Dereeper A., Guignon V., Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.-F., Guindon S., Lefort V., Lescot M., Claverie J.-M., Gascuel O.. 2008, Nucleic Acids Research. 10.1093/nar/gkn180