This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:
the Nextflow software the nf-core community and pipelines What is a singularity image ? Where are installed the nf-core workflows ? Which version do I use ? How to run a workflow and which config file is used ? Which kind of error I can get ? How to resume failed jobs? How to handle genome indexes ? How to monitor my process and then well configure my workflow ? How do you best adjust CPU and RAM reservations? This is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.
This training is focused on practice. It consists of several modules with a large variety of exercises: