* Handling mapping tools suitable for ILLUMINA and ONT data (bwa, minimap2) * SNP detection from mapping of short reads against a reference genome: SNP calling, filters and SNP annotation. Examples of possible studies based on SNP arrays * Detecting Structural Variations (SV) in short and long reads (breakdancer, sniffle) * SV detection from genome assembly and comparison (minimap2, nucmer, assemblytics, siry)