This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.
Prerequisites Prior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical
Program Why using a workflow manager to analyse data ? How to perform an analysis ? How to create your own workflow ? How to execute it? Use case
Learning objectives Explaining what Workflow Managers are, in which way they differ from each other. How you can use them in your research. Creating your own workflow Analysing your NGS data with Galaxy and TOGGLe