Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe
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Description
This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.
 
Prerequisites
Prior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical

Program
Why using a workflow manager to analyse data ?
How to perform an analysis ?
How to create your own workflow ?
How to execute it?
Use case


Learning objectives
Explaining what Workflow Managers are,
in which way they differ from each other.
How you can use them in your research.
Creating your own workflow
Analysing your NGS data with Galaxy and TOGGLe


Instructors
Alexis Dereeper (AD) - alexis.dereeper@ird.fr
Sebastien Ravel (SR) - sebastien.ravel@cirad.fr
Christine Tranchant (CT) - christine.tranchant@ird.fr