This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.
 
Prerequisites
Basic knowledge of Linux (Linux for dummies required)

Program
Connecting to a distant HPC
Manipuling text files
Complex searching for text in a file
Combining several commands
Writing simple shell scripts


Learning objectives
After this course, participants should be able to:
Manipulate and search within text files
Chain and combine commands
Perform the same actions on many files
Write a simple shell script


 


Instructors
Christine Tranchant (CT) - christine.tranchant@ird.fr
Ndomassi Tando (NT) - ndomassi.tando@ird.fr
Bruno Granouillac (BG) - bruno.granouillac@ird.fr​
François Sabot (SB) - francois.sabot@ird.fr
Gautier Sarah (GS) - gautier.sarah@cirad.fr