{"id":130,"name":"Taxonomic Profiling and Visualization of Metagenomic Data","description":"This tutorial covers the questions:\r\n- Which species (or genera, families, …) are present in my sample?\r\n- What are the different approaches and tools to get the community profile of my sample?\r\n- How can we visualize and compare community profiles?\r\n\r\nAt the end of the tutorial, learners would be able to:\r\n- Explain what taxonomic assignment is\r\n- Explain how taxonomic assignment works\r\n- Apply Kraken and MetaPhlAn to assign taxonomic labels\r\n- Apply Krona and Pavian to visualize results of assignment and understand the output\r\n- Identify taxonomic classification tool that fits best depending on their data","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/taxonomic-profiling/tutorial.html","fileName":"taxonomic-profiling","topics":["http://edamontology.org/topic_3697","http://edamontology.org/topic_0637","http://edamontology.org/topic_3174"],"keywords":["Galaxy"],"audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life scientists","Biologists"],"difficultyLevel":"Novice","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"CC-BY-4.0","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=json"]}