{"count":144,"next":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/?limit=20&offset=20&ordering=audienceRoles","previous":null,"results":[{"id":131,"name":"16S Microbial Analysis with mothur","description":"This tutorial covers the questions:\r\n- What is the effect of normal variation in the gut microbiome on host health?\r\n\r\nAt the end of the tutorial, learners would be able to:\r\n- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy\r\n- Using a mock community to assess the error rate of your sequencing experiment\r\n- Visualize sample diversity using Krona and Phinch","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/mothur-miseq-sop-short/tutorial.html","fileName":"mothur-miseq-sop-short","topics":["http://edamontology.org/topic_3697","http://edamontology.org/topic_0637"],"keywords":["Galaxy","Metabarcoding"],"audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life scientists","Biologists"],"difficultyLevel":"Novice","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"CC-BY-4.0","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/"]},{"id":134,"name":"Nucleoli segmentation and feature extraction using CellProfiler","description":"This tutorial covers the following questions:\r\n- How do I run an image analysis pipeline on public data using CellProfiler?\r\n- How do I analyse the DNA channel of fluorescence siRNA screens?\r\n- How 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data","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/taxonomic-profiling/tutorial.html","fileName":"taxonomic-profiling","topics":["http://edamontology.org/topic_3697","http://edamontology.org/topic_3174","http://edamontology.org/topic_0637"],"keywords":["Galaxy"],"audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life scientists","Biologists"],"difficultyLevel":"Novice","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"CC-BY-4.0","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/"]},{"id":133,"name":"Introduction to image analysis using Galaxy","description":"This tutorial covers the questions:\r\n- How do I use Galaxy with imaging data?\r\n- How do I convert images using Galaxy?\r\n- How do I display images in Galaxy?\r\n- How do I filter images in Galaxy?\r\n- How do I segment simple images in Galaxy?\r\n\r\nAt the end of the tutorial, learners would be able to:\r\n- How to handle images in Galaxy.\r\n- How to perform basic image processing in Galaxy.","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training.galaxyproject.org/training-material/topics/imaging/tutorials/imaging-introduction/tutorial.html","fileName":"imaging-introduction","topics":["http://edamontology.org/topic_3383","http://edamontology.org/topic_3382"],"keywords":["Galaxy"],"audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life scientists","Biologists"],"difficultyLevel":"Novice","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"CC-BY-4.0","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/"]},{"id":145,"name":"Introduction to Transcriptomics","description":"This slidedecks presents the concepts behind 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data?\r\n- How to assign taxa and function to the identified sequences?\r\n\r\nAt the end of the tutorial, learners would be able to:\r\n- Choose the best approach to analyze metatranscriptomics data\r\n- Understand the functional microbiome characterization using metatranscriptomic results\r\n- Understand where metatranscriptomics fits in ‘multi-omic’ analysis of microbiomes\r\n- Visualise a community structure","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/metatranscriptomics/tutorial.html","fileName":"metatranscriptomics","topics":["http://edamontology.org/topic_1775","http://edamontology.org/topic_3941"],"keywords":["Galaxy"],"audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life 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exercises)","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training-python-for-biology-genotoul-bioinfo-a77c191514cdd1dc1b.pages.mia.inra.fr/#/title-slide","fileName":"training-python-for-biology","topics":["http://edamontology.org/topic_3316"],"keywords":["Python Language"],"audienceTypes":["Professional (continued)"],"audienceRoles":["Life scientists"],"difficultyLevel":"Novice","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/"}],"dateCreation":null,"dateUpdate":null,"licence":"Creative Commons Attribution 4.0 International License","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/"]},{"id":143,"name":"workflows nf-core","description":"Tutorial to launch and configure nf-core workflows on genotoul bioinfo 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the end of the tutorial, learners would be able to:\r\n- Explain what taxonomic assignment is\r\n- Explain how taxonomic assignment works\r\n- Apply Kraken and MetaPhlAn to assign taxonomic labels\r\n- Apply Krona and Pavian to visualize results of assignment and understand the output\r\n- Identify taxonomic classification tool that fits best depending on their data","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training.galaxyproject.org/training-material/topics/microbiome/tutorials/taxonomic-profiling/tutorial.html","fileName":"taxonomic-profiling","topics":["http://edamontology.org/topic_3697","http://edamontology.org/topic_3174","http://edamontology.org/topic_0637"],"keywords":["Galaxy"],"audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life 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