{"count":144,"next":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/?limit=20&offset=20&ordering=-name","previous":null,"results":[{"id":55,"name":"x2Go","description":"Opening an x2go session to the IFBcloud\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://www.france-bioinformatique.fr/sites/default/files/x2go_to_IFB-VM.pdf","fileName":"missing.txt","topics":[],"keywords":["Cloud"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2016-11-23","dateUpdate":null,"licence":null,"maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/512/"]},{"id":143,"name":"workflows nf-core","description":"Tutorial to launch and configure nf-core workflows on genotoul bioinfo cluster","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/","fileName":"use-nextflow-nfcore-course","topics":["http://edamontology.org/topic_0769"],"keywords":["Nextflow"],"audienceTypes":["Professional (continued)"],"audienceRoles":["Life scientists"],"difficultyLevel":"Novice","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/"}],"dateCreation":null,"dateUpdate":null,"licence":"CC BY-NC-SA","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/"]},{"id":84,"name":"Who is doing what on the cheese surface? 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We followed the ripening process of experimental cheeses made using this consortium during four weeks, by metatranscriptomic and biochemical analyses. By combining all of the data, we were able to obtain an overview of the cheese maturation process and to better understand the metabolic activities of the different community members and their possible interactions. We next applied the same approach to investigate the activity of the microorganisms in real cheeses, namely Reblochon-style cheeses. This provided useful insights into the physiological changes that occur during cheese ripening, such as changes in energy substrates, anabolic reactions, or stresses.\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://www.france-bioinformatique.fr/sites/default/files/videos/scorms/metagenomics16/session_2/Who_is_doing_what_on_the_cheese_surface_Overview_of_the_cheese%20microbial_ecosystem_functioning_by_metatranscriptomic_analyses/scormcontent/index.html","fileName":"missing.txt","topics":[],"keywords":["Metagenomics"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2016-12-15","dateUpdate":null,"licence":"CC BY-NC-ND","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/710/"]},{"id":30,"name":"Welcome message","description":"Presentation of the workshop (Chairman: Claudine Médigue)\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://www.france-bioinformatique.fr/sites/default/files/videos/scorms/metagenomics16/session_1/welcome_message/scormcontent/index.html","fileName":"missing.txt","topics":[],"keywords":["Metagenomics","biohackaton"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2016-12-15","dateUpdate":null,"licence":"CC BY-NC-ND","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/187/","https://catalogue.france-bioinformatique.fr/api/userprofile/664/","https://catalogue.france-bioinformatique.fr/api/userprofile/431/"]},{"id":50,"name":"Welcome and Introduction","description":"\n \n\nIntroduction message of the EGDW 2017\n \n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://ressources.france-bioinformatique.fr/sites/default/files/introduction.pdf","fileName":" introduction.pdf","topics":[],"keywords":[],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2017-01-16","dateUpdate":null,"licence":null,"maintainers":[]},{"id":119,"name":"Visualization of NGS data with IGV","description":"Visualisation of next-gen sequencing data with Integrative Genomics Viewer\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://ecole-bioinfo-aviesan.sb-roscoff.fr/sites/ecole-bioinfo-aviesan.sb-roscoff.fr/files/files/IGV-Roscoff-Septembre2015.pdf","fileName":"missing.txt","topics":[],"keywords":["genomics","Data visualization","NGS"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":null,"maintainers":[]},{"id":64,"name":"Variants: alignment and pre-treatment; 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The class has already been taught by these persons but also by Gaëlle Lefort and Jérôme Mariette.\r\n\r\nPre-requisites: A background in R programming is necessary for this class. Before the class, please download the course material and install R, RStudio and the packages as described below. To produce high quality figures, I will use ggplot2 for plots but will not enter into details about the ggplot2 syntax. If you are not familiar with it, you can just use these command lines or switch to base plots instead.","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://www.nathalievialaneix.eu/teaching/rnaseq.html","fileName":"rnaseq.html","topics":[],"keywords":[],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Intermediate","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":null,"maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/"]},{"id":135,"name":"training RNASEQ Bioinfo part","description":"Cette formation a pour but de vous aider à traiter les séquences courtes issues des plates-formes de séquençage Illumina. Vous y découvrirez les formats de séquences et d’alignement les biais connus et mettrez en œuvre des logiciels d'alignement épissé sur génome de référence, la recherche de nouveaux gènes, de nouveaux transcrits et la quantification de l'expression de ces gènes et transcrits.","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://genotoul-bioinfo.pages.mia.inra.fr/training-rnaseq","fileName":"training-rnaseq","topics":[],"keywords":[],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Intermediate","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":null,"maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/"]},{"id":96,"name":"Training on Galaxy : Metagenomics","description":"Find Rapidly OTU with Galaxy Solution\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://genoweb.toulouse.inra.fr/~formation/15_FROGS/April2016/FROGS_april_2016_Formation.pdf","fileName":"missing.txt","topics":[],"keywords":["Metagenomics","Galaxy"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2016-04-01","dateUpdate":null,"licence":null,"maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/215/","https://catalogue.france-bioinformatique.fr/api/userprofile/716/"]},{"id":141,"name":"training material sed and awk training","description":"training material sed and awk training (genotoul bioinfo facility)","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://genoweb.toulouse.inra.fr/~klopp/SedAwk2024/Processing_large_files_with_sed_awk_2024.pdf","fileName":"Processing_large_files_with_sed_awk_2024.pdf","topics":["http://edamontology.org/topic_3316"],"keywords":["Programming Languages & Computer Sciences"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Intermediate","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/"}],"dateCreation":null,"dateUpdate":null,"licence":"Creative Commons Attribution 4.0 International License","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/"]},{"id":140,"name":"TP Cluster","description":"TP for cluster training (bioinfo genotoul facility)","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://genotoul-bioinfo.pages.mia.inra.fr/linux-cluster/","fileName":"linux-cluster","topics":[],"keywords":["Cluster"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Novice","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/"}],"dateCreation":null,"dateUpdate":null,"licence":"CC BY-NC-SA","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/"]},{"id":47,"name":"ToolShed upload and tool-iuc PR","description":"Questions\nWhat is a Tool Shed?\nHow to install tools and workflows from a Tool Shed into a Galaxy instance?\nWhat are the Tool Shed repository types?\nHow to publish with Planemo?\nObjectives\nDiscover what is a Tool Shed\nBe able to install tools and workflows from a Tool Shed into a Galaxy instance\nBe able to publish tools with Planemo\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://igbmc.github.io/egdw2017/day2/toolshed/index.html","fileName":"missing.txt","topics":[],"keywords":["Galaxy"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2017-01-17","dateUpdate":null,"licence":null,"maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/677/","https://catalogue.france-bioinformatique.fr/api/userprofile/689/","https://catalogue.france-bioinformatique.fr/api/userprofile/362/"]},{"id":48,"name":"Tool development and integration into Galaxy","description":"Questions:\nWhat is a tool for Galaxy?\nHow to build a tool/wrapper with the good practices?\nHow to deal with the tool environment?\n \nObjectives:\nDiscover what is a wrapper and its structure\nUse the Planemo utilities to develop a good wrapper\nDeal with the dependencies\nWrite functional tests\nMake a tool ready for publishing in a ToolShed\n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://galaxyproject.github.io/training-material/Dev-Corner/slides/tool_integration.html","fileName":"missing.txt","topics":[],"keywords":["Galaxy"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2017-01-16","dateUpdate":null,"licence":null,"maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/663/","https://catalogue.france-bioinformatique.fr/api/userprofile/677/","https://catalogue.france-bioinformatique.fr/api/userprofile/689/","https://catalogue.france-bioinformatique.fr/api/userprofile/362/"]}]}