Handles creating, reading and updating training materials.

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            "name": "Initiation to Galaxy",
            "description": "DNA-sequence analysis: from raw reads to variants calling within the galaxy environement.\n",
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            "name": " PASTEClassifier Tutorial",
            "description": "The PASTEClassifier (Pseudo Agent System for Transposable Elements Classification) is a transposable element (TE) classifier searching for structural features and similarity to classify TEs (  Hoede C. et al. 2014 )\n",
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            "name": "REPET: TEdenovo tutorial",
            "description": "The TEdenovo pipeline follows a philosophy in three first steps:\nDetection of repeated sequences (potential TE)\nClustering of these sequences\nGeneration of consensus sequences for each cluster, representing the ancestral TE\n",
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            "name": "Chip-seq: Functional Annotation tutorial",
            "description": "Global Objective\nGiven a set of ChIP-seq peaks annotate them in order to find associated genes, genomic categories and functional terms.\n",
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            "id": 106,
            "name": "Genomic copy number Tutorial",
            "description": "We will analyze the copy number variations of a human tumor (parotid gland carcinoma), limited to the chr17, from a WES (whole-exome sequencing) experiment. All genomic coordinates correspond to the 2009 build of the reference human genome (hg19 / GRC37).\n",
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            "name": "A Simple Phylogenetic Tree Construction (part 2)",
            "description": "Understand the method used in identifying an unknown sequence.\nUnderstand the limitations of this method\nGet to grips with various software (CLUSTALw, SeaView, Phylo_win and Njplot)\n",
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            "fileLocation": "http://www.prabi.fr/spip.php?article60",
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            "name": "A Simple Phylogenetic Tree Construction (part 1)",
            "description": "Understand the method behind constructing a phylogenetic tree from the search for sequences to the analysis of the tree.\nGet to grips with various bio-informatic software (BLAST, CLUSTALw, SeaView and Phylo_win).\n",
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            "name": "HOVERGEN tutorial",
            "description": "HOVERGEN is a database containing homologous vertebrate protein and nucleotide sequences. It allows to easily select similar gene sequences from a wide range of vertebrates. Hence it becomes particularly useful in comparative genomics, phylogeny and evolutionary studies on a molecular level. HOVERGEN Clean contains only complete sequences which reattach to their family. Hence its library is smaller, but more reliable.\n",
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            "name": "Chip-seq: Motif Analysis Tutorial",
            "description": "Introduction\nGoal\nThe aim is to :\nGet familiar with motif analysis of ChIP-seq data.\nLearn de novo motif discovery methods.\nIn practice :\nMotif discovery with peak-motifs\nDifferential analysis\nRandom controls\n",
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            "name": "Welcome and Introduction",
            "description": "\n \n\nIntroduction message of the EGDW 2017\n \n",
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            "fileLocation": "https://ressources.france-bioinformatique.fr/sites/default/files/introduction.pdf",
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            "dateCreation": "2017-01-16",
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            "name": "SG-ONT-slides",
            "description": "Slides used for the training \"\t\r\nIntroduction to Oxford Nanopore Technology data analyses\"",
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            "doi": null,
            "fileLocation": "https://southgreenplatform.github.io/trainings//files/ont_2021.pdf",
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            "dateCreation": "2022-01-24",
            "dateUpdate": "2022-01-24",
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        {
            "id": 119,
            "name": "Visualization of NGS data with IGV",
            "description": "Visualisation of next-gen sequencing data with Integrative Genomics Viewer\n",
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            "doi": null,
            "fileLocation": "http://ecole-bioinfo-aviesan.sb-roscoff.fr/sites/ecole-bioinfo-aviesan.sb-roscoff.fr/files/files/IGV-Roscoff-Septembre2015.pdf",
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            "id": 100,
            "name": "REPET: TEdannot Tutorial",
            "description": "TEannot is able to annote a genome using DNA sequences library. This library can be a predicted TE library built by TEdenovo\n",
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            "name": "ETBII 2023",
            "description": "All the training materials dedicated to the IFB's Integrative Bioinformatics Thematic School, which took place in January 2023.",
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            "doi": null,
            "fileLocation": "https://moodle.france-bioinformatique.fr/course/view.php?id=13",
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                "http://edamontology.org/topic_3316",
                "http://edamontology.org/topic_3474",
                "http://edamontology.org/topic_3391",
                "http://edamontology.org/topic_3365",
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                "Semantic web",
                "Data Integration"
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            "id": 115,
            "name": "Chip-seq: Pattern Analysis tutorial",
            "description": "Goal\nThe aim is to :\nGet familiar with motif analysis of ChIP-seq data.\nLearn de novo motif discovery methods.\nIn practice :\nMotif discovery with peak-motifs\nDifferential analysis\nRandom controls\n",
            "communities": [],
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            "id": 117,
            "name": "Chip-seq: Peak calling tutorial",
            "description": "The aim is to :\nUnderstand how to process reads to obtain peaks (peak-calling).\nBecome familiar with differential analysis of peaks\nIn practice :\nObtain dataset from GEO\nAnalyze mapped reads\nObtain set(s) of peaks, handle replicates\nDifferential analysis of peak\n",
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            "doi": null,
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            "id": 113,
            "name": "Chip Seq: Annotation and visualization Tutorial",
            "description": "Global Objective\nGiven a set of ChIP-seq peaks annotate them in order to find associated genes, genomic categories and functional terms.\n",
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            "id": 114,
            "name": "Chip Seq: Annotation and visualization Lesson",
            "description": "How to add biological meaning to peaks\n",
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            "doi": null,
            "fileLocation": "http://dputhier.github.io/EBA_2015_ChIP-Seq/slides/ChIP-seq_annotation_MD_2015.pdf",
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            "id": 63,
            "name": "Variant Filtering",
            "description": "Use cases:\nExtact a subset of variants\nCombine variants from several analysis\n\nCompare obtained variants from several data types\n\n\nIdentify new variants compare to a reference list\n\n\nApply specific filters for Chip Design\n\n",
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            "doi": null,
            "fileLocation": "http://ecole-bioinfo-aviesan.sb-roscoff.fr/sites/ecole-bioinfo-aviesan.sb-roscoff.fr/files/files/FiltrageVariantNLapaluRoscoff2015.pdf",
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            "id": 104,
            "name": "Exploring microbiomes with the MicroScope Platform",
            "description": "This module is separated in different courses:\nMicroScope: General overview, Keyword search and gene cart functionalities\n\n\n\n\n\n\n\n\n\n\n\n\nFunctional annotation of microbial genomes\n\n\n\n\n\n\n\n\nFunctional annotation of microbial genomes: Prediction of enzymatic functions\n\n\n\n\n\n\n\n\nRelational annotation of bacterial genomes: synteny\n\n\n\n\n\n\n\n\nAutomatic functional assignation and expert annotation of genes\n\n\n\n\n\n\n\n\nRelational annotation of bacterial genomes: phylogenetic profiles\n\n\n\n\n\n\n\n\nRelational annotation of bacterial genomes: pan-genome analysis\n\n\n\n\n\n\n\n\nRelational annotation of bacterial genomes: metabolic pathways\n\n\n\n\nSyntactic re-annotation of public microbial genomes\n\n\n\n\nSyntactic annotation of microbial genomes\n\n\n\n\n \n",
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            "doi": null,
            "fileLocation": "http://www.france-bioinformatique.fr/sites/default/files/Cours_MicroScope_mars2016_18-125.pdf",
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                "Transcriptomics",
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                "Metabolomics"
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