Training Material List
Handles creating, reading and updating training materials.
GET /api/trainingmaterial/?limit=20&offset=20&ordering=description
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GATK", "description": "DNA-seq Bioinformatics Analysis: from raw sequences to processed alignments\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://www.france-bioinformatique.fr/sites/default/files/V01_ITMO_2016_EG_from_fastq_to_mapping_1.pdf", "fileName": "missing.txt", "topics": [], "keywords": [ "genomics", "DNA-seq" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2016-11-22", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/256/" ] }, { "id": 120, "name": "Initiation to Galaxy", "description": "DNA-sequence analysis: from raw reads to variants calling within the galaxy environement.\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://ecole-bioinfo-aviesan.sb-roscoff.fr/sites/ecole-bioinfo-aviesan.sb-roscoff.fr/files/files/GALAXY-TP-INITIATION-Roscoff-Septembre2015.pdf", "fileName": "missing.txt", "topics": [], "keywords": [ "DNA Analysis", "Variant calling", "Galaxy" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": null, "dateUpdate": null, "licence": null, "maintainers": [] }, { "id": 89, "name": "Docker Tutorial", "description": "Docker is free software that automates the deployment of applications in software containers executant in isolation. A Docker container, away from traditional virtual machines, requires no separate operating system and not providing any but relies instead on the core functionality and uses the isolation of resources and namespaces separated to isolate the operating system as seen by the application.\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://bioserv.rpbs.univ-paris-diderot.fr/tutorials.html", "fileName": "missing.txt", "topics": [], "keywords": [ "Docker" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": null, "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/523/" ] }, { "id": 73, "name": "200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics", "description": "EBI metagenomics (EMG, https://www.ebi.ac.uk/metagenomics/) is a freely available hub for the analysis and exploration of metagenomic, metatranscriptomic, amplicon and assembly data. The resource provides rich functional and taxonomic analyses of user-submitted sequences, as well as analysis of publicly available metagenomic datasets held within the European Nucleotide Archive (ENA). EMG has recently undergone rapid expansion, with an over 10-fold increase in data volumes in the first 5 months of 2016. It now houses ~ 50k publicly available data sets, and represents one of the largest collections of analysed metagenomic data. As its data content has grown, EMG has increasingly become a platform for data discovery. To support this process, we have made a series of user-interface improvements, including the classification of projects by biome, presentation of results data for better visualisation and more convenient download, and provision of project level summary files. More recently, we have indexed project metadata for use with the EBI search engine, enabling exploration across different datasets. For example, users are able to search with a particular taxonomic lineage or protein function and discover the projects, samples and sequencing runs in which that lineage or function is found. This functionality allows users to explore associations between biomes, environmental conditions and organisms and functions (e.g., discovering protein coding sequences that correspond to certain enzyme families found in aquatic environments at a given temperature range). Here, we give an overview of the EMG data analysis pipeline and web site, and illustrate the use of the new search facility for data discovery.\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://www.france-bioinformatique.fr/sites/default/files/videos/scorms/metagenomics16/session_7/200_billions_sequences_and_counting_discovery_and_exploration_of_datasets_with_EBI_metagenomics/scormcontent/index.html", "fileName": "missing.txt", "topics": [], "keywords": [ "Metagenomics" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2016-12-16", "dateUpdate": null, "licence": "CC BY-NC-ND", "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/704/" ] }, { "id": 17, "name": "Enrichment and propagation of metagenomic experimental metadata", "description": "\n \n\nEnrichment and propagation of metagenomic experimental metadata\n \n", "communities": [], "elixirPlatforms": [], "doi": null, 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Solution\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://genoweb.toulouse.inra.fr/~formation/15_FROGS/April2016/FROGS_april_2016_Formation.pdf", "fileName": "missing.txt", "topics": [], "keywords": [ "Metagenomics", "Galaxy" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2016-04-01", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/215/", "https://catalogue.france-bioinformatique.fr/api/userprofile/716/" ] }, { "id": 15, "name": "From Biotea to Bioschemas: definition of profiles required to represent scholarly publications", "description": "\n \n\nFrom Biotea to Bioschemas: definition of profiles required to represent scholarly publications\n \n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://ressources.france-bioinformatique.fr/sites/default/files/videos/scorms/from-biotea-to-bioschemas_28f9/scormcontent/index.html", "fileName": "missing.txt", "topics": [], "keywords": [ "biohackaton 2018" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2019-03-21", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/678/" ] }, { "id": 31, "name": "Galaxy Docker Training Tutorial", "description": "Galaxy docker integration\nEnable Galaxy to use BioContainers (Docker)\nGalaxy with Docker swarm\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "https://github.com/igbmc/egdw2017/tree/master/day4/admin/10-docker-swarm", "fileName": "missing.txt", "topics": [], "keywords": [ "Docker", "Galaxy" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2017-01-19", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/663/" ] }, { "id": 67, "name": "Galaxy: Initiation II", "description": "Galaxy II: common tools, quality control; alignment; data managment\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://www.france-bioinformatique.fr/sites/default/files/G045_16-11-21-galaxy-tp-initiation-II-0.3.pdf", "fileName": "missing.txt", "topics": [], "keywords": [ "genomics" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2016-11-21", "dateUpdate": null, "licence": "CC BY-NC-SA", "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/362/" ] }, { "id": 49, "name": "Development in Galaxy", "description": "Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, ... Here, you will find some materials to learn how to contribute to Galaxy project.\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "https://github.com/galaxyproject/training-material/tree/master/Dev-Corner", "fileName": "missing.txt", "topics": [], "keywords": [ "Galaxy" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": null, "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/", "https://catalogue.france-bioinformatique.fr/api/userprofile/77/", "https://catalogue.france-bioinformatique.fr/api/userprofile/689/", "https://catalogue.france-bioinformatique.fr/api/userprofile/362/" ] }, { "id": 39, "name": "Galaxy Handlers", "description": "Galaxy is a web application that uses handlers to perform actions.\nThere are two main types of actions that are carried out by handlers:\nRespond to user requests; These actions are carried out by web handlers\nManage the execution of tools; These actions are performed by job handlers.\nBy default, Galaxy is configured to run a single handler that handles both user queries and jobs.\nDepending on the number of users accessing your Galaxy instance or the number of jobs you need to manage you may need to start web handlers or additional job handlers.\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "https://igbmc.github.io/egdw2017/day4/admin/03-handlers/index.html", "fileName": "missing.txt", "topics": [], "keywords": [ "Galaxy" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2017-01-19", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/563/" ] }, { "id": 14, "name": "Galaxy training material improvement and extension", "description": "\n \n\nGalaxy training material improvement and extension\n \n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "http://ressources.france-bioinformatique.fr/sites/default/files/videos/scorms/galaxy-training-material_6300/scormcontent/index.html", "fileName": "missing.txt", "topics": [], "keywords": [ "biohackaton 2018" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2019-03-21", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/677/" ] }, { "id": 122, "name": "Docker tutorial: Gene regulation", "description": "Get started with Docker!\nCreate a Docker account\nInstall Docker on your local host\nCreate shared repositories and download source data\nFetch the Docker image and run it with shared folders\nExecute the pipeline\n\nJVH / Mac\n", "communities": [], "elixirPlatforms": [], "doi": null, "fileLocation": "https://github.com/rioualen/gene-regulation/blob/master/doc/gene-regulation_tutorials/gene-regulation_with_docker.Rmd", "fileName": "missing.txt", "topics": [], "keywords": [ "Gene regulation", "Docker" ], "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "providedBy": [], "dateCreation": "2016-05-31", "dateUpdate": null, "licence": null, "maintainers": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/660/", "https://catalogue.france-bioinformatique.fr/api/userprofile/624/" ] } ] }