{"count":149,"next":null,"previous":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/?format=json&limit=20&offset=120&ordering=-licence","results":[{"id":53,"name":"RNA - Seq de novo","description":"\n \n\nPractical session on transciptome de novo assembly\n \n","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"http://ressources.france-bioinformatique.fr/sites/default/files/A01b_Galaxy_RNASeq_denovo_ITMO2016_TP_v2red.pdf","fileName":"missing.txt","topics":[],"keywords":["RNA-seq"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2016-11-23","dateUpdate":null,"licence":"CC BY-NC-SA","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/388/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/134/?format=json"]},{"id":138,"name":"Linux TP - Genotoul-bioinfo","description":"TP for linux training (genotoul bioinfo facility)\r\nThis training session on one day (09:00 / 17 :00) is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your workstation, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://genotoul-bioinfo.pages-forge.inrae.fr/linux-cluster/","fileName":"linux-cluster","topics":["http://edamontology.org/topic_3316"],"keywords":["Operating systems"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Novice","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"CC BY-NC-SA","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"]},{"id":137,"name":"Linux slides - Genotoul-bioinfo","description":"Slides for linux session (genotoul bioinfo facility)\r\nThis training session on one day (09:00 / 17 :00) is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your workstation, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://bioinfo.genotoul.fr/wp-content/uploads/Formation_LINUX_GenoToul_2025.pdf","fileName":"Formation_LINUX_GenoToul_2025.pdf","topics":["http://edamontology.org/topic_3316"],"keywords":["Operating systems"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Novice","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"CC BY-NC-SA","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"]},{"id":143,"name":"Workflows nf-core - Genotoul-bioinfo","description":"Tutorial to launch and configure nf-core workflows on genotoul bioinfo cluster.\r\nThis training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? 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This training session has been designed so you can deal with the platform resources and its organization. You will learn to deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. The objective of this training is to learn you how to use computing ressources from GenoToul Bioinfo cluster (submit, manage & monitor jobs).","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://bioinfo.genotoul.fr/wp-content/uploads/Formation_cluster_SLURM_2025.pdf","fileName":"Formation_cluster_SLURM_2025.pdf","topics":[],"keywords":["Cluster"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Novice","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"dateCreation":null,"dateUpdate":null,"licence":"CC BY-NC-SA","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"]},{"id":142,"name":"Introduction to python - Genotoul-bioinfo","description":"Training slides (theory and exercises).\r\nThe Toulouse Genotoul bioinformatics platform, organizes a 2 days long training course for non computer scientist and biologists aiming at learning the foundation of Python programming. In this training you will learn the basics of programming (variables, functions, control structures such as “if” condition, “for” loop”), writing simple programs which read files, and write results to others. The training course does not require any knowledge in programming, but basic Linux/bash commands are required (cd, ls).","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://training-python-for-biology-genotoul-bioinfo-a77c191514cdd1dc1b.pages.mia.inra.fr/#/title-slide","fileName":"training-python-for-biology","topics":["http://edamontology.org/topic_3316"],"keywords":["Python Language"],"audienceTypes":["Professional (continued)"],"audienceRoles":["Life scientists"],"difficultyLevel":"Novice","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"dateCreation":null,"dateUpdate":null,"licence":"Creative Commons Attribution 4.0 International License","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"]},{"id":148,"name":"Perl One-liner - Genotoul-bioinfo","description":"Improve your command line skills by learning a few words of Perl (08/12/2025)\r\nThe GenoToul bioinformatics platform and Sigenae organize a series of training courses to familiarize yourself with the various resources it provides. These resources are currently: the hardware infrastructure, biological data banks and widely used bioinformatics softwares. This “Perl one-liners” training session is organized by the Sigenae platform. Perl one-liners are small and awesome Perl programs that fit in a single line of code and perform many operations such as replacing of text, spacing, deleting, calculation, manipulation in files and many more. This training will allow you to discover the power of Perl on the command line and learn how to use it to automate your file manipulations and command line generation with classical file formats such as tabulated text, fastq, sam/bam, and vcf.\r\n\r\ncalendar\r\n \r\n\r\nThis training lasts one day and is focused on practice. It consists of 3 parts with a large variety of exercises:\r\n\r\nIntroduction to Perl and its characteristics: Perl is a widely used programming language for data processing and task automation. We will introduce the main characteristics of Perl and discuss why it is particularly suited for biologists who want to manipulate files and generate command lines.\r\nPerl on the command line: we will show how to use Perl on the command line to perform common tasks, such as searching and replacing strings, merging files, and loop over lists of files.\r\nConcrete examples: we will present several concrete examples drawn from biology, such as extracting information from genomic sequence files, converting files between different formats, and generating command lines for data biology tools.","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://web-genobioinfo.toulouse.inrae.fr/~ccabau/Perl_One-liner.pdf","fileName":"Perl_One-liner.pdf","topics":["http://edamontology.org/topic_3316"],"keywords":["Programming Languages & Computer Sciences"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Intermediate","providedBy":[],"dateCreation":null,"dateUpdate":null,"licence":"Creative Commons Attribution 4.0 International License","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"]},{"id":141,"name":"Sed and awk training - Genotoul-bioinfo","description":"training material sed and awk training (genotoul bioinfo facility)","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://genoweb.toulouse.inra.fr/~klopp/SedAwk2024/Processing_large_files_with_sed_awk_2024.pdf","fileName":"Processing_large_files_with_sed_awk_2024.pdf","topics":["http://edamontology.org/topic_3316"],"keywords":["Programming Languages & Computer Sciences"],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Intermediate","providedBy":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"dateCreation":null,"dateUpdate":null,"licence":"Creative Commons Attribution 4.0 International License","maintainers":["https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json"]},{"id":1,"name":"SG-ONT-slides","description":"Slides used for the training \"\t\r\nIntroduction to Oxford Nanopore Technology data analyses\"","communities":[],"elixirPlatforms":[],"doi":null,"fileLocation":"https://southgreenplatform.github.io/trainings//files/ont_2021.pdf","fileName":"ont_2021.pdf","topics":[],"keywords":[],"audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","providedBy":[],"dateCreation":"2022-01-24","dateUpdate":"2022-01-24","licence":"Creative Commons Attribution 4.0 International License","maintainers":[]}]}