{"count":388,"next":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=100&ordering=-learningOutcomes","previous":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=60&ordering=-learningOutcomes","results":[{"id":213,"name":"Analyse bioinformatique de données RNA-Seq sous Galaxy","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/342/?format=json"]},{"id":321,"name":"Genopole Autumn School","shortName":"","description":"Cette formation est dédiée aux chercheurs, ingénieurs et doctorants et dispensée en anglais par des experts internationaux de la génomique.\r\nLes points forts de la formation :\r\n\r\n    Des sessions de formation pratiques aux outils d’analyse génomique\r\n    Des experts des grands centres nationaux et internationaux (Université d’Evry – Paris-Saclay, Inrae, CEA, CNRS, Université du Luxembourg, EMBL-EBI)\r\n    Format résidentiel tout inclus dans un cadre accueillant et propice au networking\r\n    Effectif limité à 15 participants pour une qualité optimale des sessions pratiques\r\n    Formation éligible à la prise en charge employeurs ou OPCO","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":null,"updated_at":"2022-11-14T16:38:22.898523Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/501/?format=json"]},{"id":377,"name":"RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS","shortName":"RNASeq bioinfo / biostat","description":"The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.","homepage":"https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_0203","http://edamontology.org/topic_3308"],"keywords":["NGS Data Analysis","Expression"],"prerequisites":["Linux/Unix","Cluster","Langage R de base"],"openTo":"Everyone","accessConditions":"Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":15,"name":"MIAT","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=json"}],"organisedByTeams":[{"id":33,"name":"Genotoul-biostat","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=json"},{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2025-12-09T09:40:46.927545Z","audienceTypes":["Professional (continued)"],"audienceRoles":["Life scientists","Biologists","Bioinformaticians"],"difficultyLevel":"Intermediate","trainingMaterials":[{"id":136,"name":"Training RNASeq - biostat part - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20biostat%20part%20-%20Genotoul-bioinfo/?format=json"},{"id":135,"name":"Training RNASeq - bioinfo part - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Training%20RNASeq%20-%20bioinfo%20part%20-%20Genotoul-bioinfo/?format=json"}],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":21,"personalised":false,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/754/?format=json","https://catalogue.france-bioinformatique.fr/api/event/612/?format=json","https://catalogue.france-bioinformatique.fr/api/event/721/?format=json"]},{"id":156,"name":"Python for biology","shortName":"","description":"","homepage":"https://cnrsformation.cnrs.fr/stage-17266-Python-pour-la-biologie.html","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Sequence Algorithm","Python Language","Sequence analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"CNRS fee-based training\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":251,"name":"Survival Guide for Perl applied to Bioinformatics","shortName":"","description":" \n\n\t\t\tThis course provides an introduction to programming using Perl and at the end of the training, participants could write simple Perl programs to handle biological data and to undertstand more complex Perl programs written by others.\n\t\t\t\nPrerequisites\nBasic knowledge of Linux (Linux for dummies required)\n\nProgram\nPerl data structures (scalar,arrays, hashes)\nStructure control ( loops)\nBasic functions, and operators.\nWriting and running your own program\nPassing options and files to his own script.\nRegular expressions\n\n\nLearning objectives\nWriting simple Perl programs to analyze data files\nUnderstanding Perl programs written by others\nUsing Perl basic syntax and modules in their own script\nRun programs from their script, parsing and extracting data from data files\n\n\nInstructors\n\n\nChristine Tranchant  - christine.tranchant@ird.fr\nFrançois Sabot - francois.sabot@ird.fr\nNdomassi tando - ndomassi.tando@ird.fr\n\n","homepage":"https://southgreenplatform.github.io/trainings//perl/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":12,"name":"LAPSE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=json"},{"id":13,"name":"Formation permanente IRD","url":"https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=json"}],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/383/?format=json"]},{"id":347,"name":"Introduction to Microbial Comparative Genomics","shortName":"","description":"This course offers an introduction to microbial genomics analysis.\r\nIt includes 5 issues: assembly, genome annotation, circos visualization, pan-genome construction, pan-GWAS.","homepage":"https://southgreenplatform.github.io/trainings//bacterialGenomics/","is_draft":false,"costs":["Free"],"topics":[],"keywords":["genomics","Structural genomics","Genome analysis"],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Internal personnel","accessConditions":"Open to South Green close collaborators","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/772/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T14:54:55.468140Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Intermediate","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":5,"hoursHandsOn":5,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/558/?format=json","https://catalogue.france-bioinformatique.fr/api/event/561/?format=json"]},{"id":14,"name":"Formation interne pipeline RNASeq","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis","Analysis of RNAseq data"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":317,"name":"Datathon AGENT - FAIRDOM","shortName":"FAIRDOM","description":"Datathon on experimental phenotypic data management using the FAIRDOM platform, and submission workflow using curation & validation tools.","homepage":"","is_draft":false,"costs":["Free"],"topics":["http://edamontology.org/topic_3571","http://edamontology.org/topic_3365","http://edamontology.org/topic_3366","http://edamontology.org/topic_3572","http://edamontology.org/topic_0625","http://edamontology.org/topic_0780","http://edamontology.org/topic_0091"],"keywords":["Données"],"prerequisites":["Attendees will bring their own data"],"openTo":"Internal personnel","accessConditions":"For H2020-AGENT project members only","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":21,"name":"H2020-AGENT","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/H2020-AGENT/?format=json"}],"organisedByOrganisations":[{"id":39,"name":"URGI - US1164","url":"https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=json"},{"id":82,"name":"INRAE","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=json"}],"organisedByTeams":[{"id":26,"name":"URGI","url":"https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=json"}],"logo_url":"https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png","updated_at":"2025-09-13T13:27:42.544621Z","audienceTypes":["Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["All"],"difficultyLevel":"Novice","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":true,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/737/?format=json","https://catalogue.france-bioinformatique.fr/api/event/735/?format=json"]},{"id":212,"name":"NGS sous Galaxy","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/341/?format=json"]},{"id":210,"name":"Python avance","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/339/?format=json"]},{"id":68,"name":"Sequences alignment and phylogeny ","shortName":"","description":"This training session is organized by the bios4Biol CATI and the genotoul bioinfo platform and aims at initiating participants to molecular phylogenetics studies.\nYou will discover how to build a sequence dataset, to align sequences, to edit and refine the resulting alignment.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/sequences-alignment-phylogeny/","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":315,"name":"Using sed and awk to modify large large text files","shortName":"","description":"Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions.  The course is based mainly on exercises with small sections presenting concepts and commands.","homepage":"https://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/","is_draft":false,"costs":["Non-academic: 550€ + 20% taxes (TVA)","Academic but non-INRAE: 170 € + 20% taxes (TVA)","For INRAE's staff: 150 € no VAT charged;"],"topics":["http://edamontology.org/topic_3316"],"keywords":[],"prerequisites":["Linux/Unix"],"openTo":"Everyone","accessConditions":"","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/338/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":37,"name":"MIAT - Mathématiques et Informatique Appliquées de Toulouse","url":"https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=json"}],"organisedByTeams":[{"id":22,"name":"Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=json"}],"logo_url":"https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png","updated_at":"2025-12-09T10:31:46.651968Z","audienceTypes":["Professional (continued)"],"audienceRoles":["Biologists"],"difficultyLevel":"Novice","trainingMaterials":[{"id":146,"name":"Processing large files with sed awk  - Genotoul-bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Processing%20large%20files%20with%20sed%20awk%20%20-%20Genotoul-bioinfo/?format=json"}],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":false,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/478/?format=json","https://catalogue.france-bioinformatique.fr/api/event/479/?format=json","https://catalogue.france-bioinformatique.fr/api/event/611/?format=json","https://catalogue.france-bioinformatique.fr/api/event/631/?format=json","https://catalogue.france-bioinformatique.fr/api/event/669/?format=json"]},{"id":348,"name":"Advanced HPC Trainings","shortName":"","description":"This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.","homepage":"https://southgreenplatform.github.io/trainings//Advanced_HPC/","is_draft":false,"costs":["Free"],"topics":[],"keywords":["HPC","SLURM"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Oprn to South Green close collaborators","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":85,"name":"IRD","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=json"}],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T14:46:58.108350Z","audienceTypes":["Professional (continued)"],"audienceRoles":["All"],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/557/?format=json","https://catalogue.france-bioinformatique.fr/api/event/565/?format=json"]},{"id":69,"name":"Methods for phylogenetics trees construction","shortName":"","description":"This training session is organized by the bios4Biol CATI and aims at training participants to construct and interpret phylogenetic trees.\nYou will discover how to choose an evolutionary model and a phylogenetic inference method (among distance, parsimony, maximum likelihood and Bayesian methods) and how to evaluate the robustness of a tree using bootstrap.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/methods-for-phylogenetic-trees-const…","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Genes and genomes"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":84,"name":"Master STIC pour la Santé","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":["Master"],"openTo":"Internal personnel","accessConditions":"Accès en local aux différents clusters\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":71,"name":"Galaxy : first step","shortName":"","description":"Galaxy is a workbench available for biologists from Sigenae Platform. Galaxy objectives are:\n    First, making bioinfo Linux tools accessible to biologists.\n    Then, it is possible to add Linux tools by developpers into Galaxy workbench.\n    Then, Galaxy is used to hide the complexity of the infrastructure and to allow creation, execution and sharing of workflows.\nYou will acquire the following competencies required for the other Galaxy trainning:\n    Login to Galaxy: Galaxy Workbench (To access to Galaxy, you need to have an LDAP Genotoul login and password).\n    Begin to use some tools provided (BWA, SAM tools, FastQC).\n    Work on files.\nOrganized jointly by the Sigenae and the Bioinfo Genotoul platform.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/first-step-with-galaxy/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Web portals","Galaxy","Interfaces","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":374,"name":"Best practices in Bioinformatics","shortName":"Best practices BiRD cluster","description":"Objectives\r\n- Understand and implement the principles of reproducible science in analysis and development projects\r\n- Acquire basic commands necessary for optimal use of a HPC cluster\r\n\r\nCourse Content\r\n- Introduction to reproducibility\r\n- Best practices on code history and sharing: Git\r\n- Software environment : conda/mamba\r\n- Presentation of a HPC cluster\r\n- Introduction to workflows using Snakemake","homepage":"https://pf-bird.univ-nantes.fr/training/cluster/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Everyone","accessConditions":"- Familiarity with basic Linux commands or have completed the training course “Introduction to the command-line interface.”\r\n- Have an account on the GLiCID cluster.","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-01-27T11:08:14.810708Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":7,"hoursHandsOn":null,"hoursTotal":7,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/602/?format=json","https://catalogue.france-bioinformatique.fr/api/event/748/?format=json","https://catalogue.france-bioinformatique.fr/api/event/641/?format=json"]},{"id":73,"name":"Galaxy : RNASeq alignment and transcripts assemblies","shortName":"","description":"As the command line training but with Galaxy. Organized jointly by the Sigenae and the Bioinfo Genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-and-transcripts-ass…","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis","Analysis of RNAseq data","Gene expression differential analysis","Galaxy","Transcript and transcript variant analysis","Transcriptomics (RNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":399,"name":"Interactive Online Companionship - R formation 2026","shortName":"IOC - R","description":"Introduction R for data science (November 2025 to January 2026) – 10 sessions of 3 hours – €800\r\n\r\nThis course covers the basics of R, data organization and filtering, basic statistics, and creation of publication-ready graphics. The goal is to make you self-sufficient in using R for your own analyses.\r\n\r\n\r\nKey Highlights:\r\n\r\nSmall group sessions for interactive and personalized learning.\r\nHybrid mode with 3 in-person sessions and 7 remote sessions.\r\nHands-on practice with an individualized project presented at the end of each training course.\r\nTailored feedback on your own data.\r\nLimited spots available, registration is now open.","homepage":"https://inforbio.github.io/ioc_r_scrnaseq.html","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":["none"],"openTo":"Everyone","accessConditions":"","maxParticipants":16,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/809/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":18,"name":"IBiSA","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/IBiSA/?format=json"},{"id":19,"name":"Sorbonne Université","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Sorbonne%20Universit%C3%A9/?format=json"}],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://github.com/InforBio/InforBio.github.io/blob/main/images/logoInforBio_fond_blanc.png?raw=true","updated_at":"2025-09-11T14:23:22.054252Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Novice","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":30,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":83,"name":"Projet AMIDEX \"spongex\"","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Autre"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Accès en local aux différents clusters\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]}]}