{"count":388,"next":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=180&ordering=-updated_at","previous":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=140&ordering=-updated_at","results":[{"id":77,"name":"Formation de chercheurs","shortName":"","description":" lors de Workshop (organisation de séances de travaux pratiques)\n pour des formations individuelles\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Metagenomics"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Gratuit\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":76,"name":"Master Bioinfo Toulouse ","shortName":"","description":"Organized by Sigenae and Bioinfo Genotoul platforms.\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":["Master"],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":31,"name":"Fouille de texte","shortName":"","description":"http://migale.jouy.inra.fr/?q=fr/formations\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Autre"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"http://migale.jouy.inra.fr/?q=fr/formations\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":75,"name":"Galaxy: metagenomic: sequence analysis of amplicons from MiSeq and 454 sequencing with FROGS with Galaxy first step and statistics","shortName":"","description":"This training session, organized by Bioinfo Genotoul, Sigenae, NED (GenPhySE) and TWB, is designed to help you to deal with NGS data of 16S, 18S ... DNA produced with MiSeq from Illumina and Roche 454 technologies in the Galaxy workbench.\nYou will discover how to use our Galaxy instance, clean reads, clusterize them, do the taxonomic affiliation and perform statistics to interpret your results.\nPrerequisites: knowledge of R or in another programming language\n","homepage":"http://bioinfo.genotoul.fr/index.php","is_draft":false,"costs":[],"topics":[],"keywords":["Galaxy"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"An account on the platform Bioinfo Genotoul is necessary (request a form on the website), you need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":29,"name":"Initiation à Python","shortName":"","description":"\nObjectifs\n\nInitiation à la programmation.\nRéalisation de tâches simples d'extractions d'informations.\nIdentifier les possibilités offertes par l'écriture de quelques lignes de codes.\n \n\n \n \n \n \nProgramme\n\n• Présentation de Python\n• Variables Python\n• Structures de contrôle\n• Réalisation de programmes simples\n• Gestion de fichiers\n• Fonctions\nIllustration avec des exercices de manipulation de fichiers de séquences\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","Python Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/252/?format=json"]},{"id":73,"name":"Galaxy : RNASeq alignment and transcripts assemblies","shortName":"","description":"As the command line training but with Galaxy. Organized jointly by the Sigenae and the Bioinfo Genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-and-transcripts-ass…","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis","Analysis of RNAseq data","Gene expression differential analysis","Galaxy","Transcript and transcript variant analysis","Transcriptomics (RNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":72,"name":"Galaxy : Reads alignment and SNP calling","shortName":"","description":"As the command line training but with Galaxy. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-varia…","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["NGS Data Analysis","Galaxy","Variant analysis","Genomics (DNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/262/?format=json"]},{"id":71,"name":"Galaxy : first step","shortName":"","description":"Galaxy is a workbench available for biologists from Sigenae Platform. Galaxy objectives are:\n    First, making bioinfo Linux tools accessible to biologists.\n    Then, it is possible to add Linux tools by developpers into Galaxy workbench.\n    Then, Galaxy is used to hide the complexity of the infrastructure and to allow creation, execution and sharing of workflows.\nYou will acquire the following competencies required for the other Galaxy trainning:\n    Login to Galaxy: Galaxy Workbench (To access to Galaxy, you need to have an LDAP Genotoul login and password).\n    Begin to use some tools provided (BWA, SAM tools, FastQC).\n    Work on files.\nOrganized jointly by the Sigenae and the Bioinfo Genotoul platform.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/first-step-with-galaxy/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Web portals","Galaxy","Interfaces","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":70,"name":"Phylogenomy and selection pressure ","shortName":"","description":"This training session is organized by the bios4Biol CATI.\nMorning : phylogenomics\nThe morning course will provide insigths about sampling problems in phylogenomics studies (genes, species) and methodological aspects of phylogenomics studies with two major focus on super-matrix and super-tree methods.\nAfternoon : selection pressure\nThe afternoon course will be dedicated to the use of the PAML4 package in order to study selection pressures in a sequence alignment.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/phylogenomics-and-selection-pressure…","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Selection Detection","Phylogenomics","Genes and genomes"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":28,"name":"Initiation à R","shortName":"","description":"\nObjectifs\n\n- Présenter le langage de programmation R et ses principes.\n- Utiliser les principales fonctionnalités de ce langage pour effectuer des calculs mathématiques, statistiques ou des représentations graphiques.\n- Attention : ce module n'est ni un module de statistique, ni un module d'analyse statistique des données.\n\nProgramme\n\n- Structures et manipulation de données.\n- Principaux éléments du langage de programmation (boucle, fonctions…).\n- Différentes représentations graphiques de données/résultats (plot, histogramme, boxplot).\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","R Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/251/?format=json"]},{"id":30,"name":"Python avancé","shortName":"","description":"\nObjectifs\n\nEtre autonome pour des manipulations simples visant à extraire, reformater des données issues de fichiers texte.\n \n\n \n \n \n \nProgramme\n\n- Expressions régulières\n- Gestion des erreurs\n- Biopython\n- Réalisation de programmes simples\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","Python Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/253/?format=json"]},{"id":1,"name":"Formation de base","shortName":"","description":"None EN\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"None EN\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/202/?format=json"]},{"id":69,"name":"Methods for phylogenetics trees construction","shortName":"","description":"This training session is organized by the bios4Biol CATI and aims at training participants to construct and interpret phylogenetic trees.\nYou will discover how to choose an evolutionary model and a phylogenetic inference method (among distance, parsimony, maximum likelihood and Bayesian methods) and how to evaluate the robustness of a tree using bootstrap.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/methods-for-phylogenetic-trees-const…","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Genes and genomes"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":68,"name":"Sequences alignment and phylogeny ","shortName":"","description":"This training session is organized by the bios4Biol CATI and the genotoul bioinfo platform and aims at initiating participants to molecular phylogenetics studies.\nYou will discover how to build a sequence dataset, to align sequences, to edit and refine the resulting alignment.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/sequences-alignment-phylogeny/","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":111,"name":"Spectrométrie de masse, analyse protéomique et interprétation des données","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Autre"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":303,"name":"Tools for phylogenetic analysis","shortName":"","description":"You will learn How to find homologs, make multiple alignments, reconstruct the phylogeny, visualize the tree.\r\n\r\nAt the end of the workshop, you will be able to use web tools to reconstruct accurate phylogenies.\r\n\r\nUnless all participants speak French, the course will be taught in English.","homepage":"https://pliniuscursus.univ-amu.fr/formation/tools-for-phylogenetic-analysis/","is_draft":false,"costs":["Free to academics"],"topics":["http://edamontology.org/topic_0084"],"keywords":[],"prerequisites":["Master"],"openTo":"Internal personnel","accessConditions":"The first sessions are only available for IM2B students.","maxParticipants":10,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":38,"name":"IGS - Laboratoire Information Génomique et Structurale","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IGS%20-%20Laboratoire%20Information%20G%C3%A9nomique%20et%20Structurale/?format=json"}],"organisedByTeams":[{"id":23,"name":"PACA-Bioinfo","url":"https://catalogue.france-bioinformatique.fr/api/team/PACA-Bioinfo/?format=json"}],"logo_url":null,"updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":["Graduate"],"audienceRoles":["Biologists"],"difficultyLevel":"Novice","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":1,"hoursHandsOn":5,"hoursTotal":6,"personalised":null,"event_set":[]},{"id":209,"name":"Initiation à Python","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/338/?format=json"]},{"id":13,"name":"Formation interne pipeline DEVA detection de variants par NGS","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":11,"name":"Bioinformatique, NGS et Cancer","shortName":"","description":"Co-organisation Atelier Cancéropole Ile de France « Bioinformatique, NGS et Cancer» (avril 2014 et Nov 2014)\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"http://www.canceropole-idf.fr/fr/ngs\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":252,"name":"Introduction to High-performance computing","shortName":"","description":"This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr​\n\n","homepage":"https://southgreenplatform.github.io/trainings//HPC/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/384/?format=json"]}]}