{"count":388,"next":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=180&ordering=-difficultyLevel","previous":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=140&ordering=-difficultyLevel","results":[{"id":247,"name":"Manual curation of Transposable element annotation","shortName":"","description":"URGI organizes a BYOD-­style (Bring Your Own Data) training course on manual curation of transposable elements reference sequences obtained with REPET pipelines.\n","homepage":"https://urgi.versailles.inra.fr/Platform/Training/Manual-curation-of-Transposabl…","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"https://ressources.france-bioinformatique.fr/sites/default/files/Capture%20d%E2%80%99e%CC%81cran%202018-12-05%20a%CC%80%2009.40.29_0.png","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/379/?format=json"]},{"id":119,"name":"Modules Biologie École Doctorale SVSAE","shortName":"","description":"Les UE de bioinformatique de la spécialité AMD sont ouvertes aux doctorants de l'école doctorale SVSAE dans le cadre de leur formation doctorale. 3 UE sont particulièrement suivies : UE « Programmation en perl », UE « Bioistatistiques et programmation sous R » et UE « Génomique et bioinformatique ». Les formations continues proposées dans le domaine de la bioinformatique sont également ouvertes aux étudiants de l'Ecole Doctorale, et permettent de valider un module de biologie. Forme 2 à 3 doctorants par an.\n \n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":["Autre (Diplôme universitaire, école d'ingénieur ...)"],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":210,"name":"Python avance","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/339/?format=json"]},{"id":84,"name":"Master STIC pour la Santé","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":["Master"],"openTo":"Internal personnel","accessConditions":"Accès en local aux différents clusters\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":64,"name":"Read alignment and SNP calling","shortName":"","description":"This training session, organized jointly with the Sigenae platform, is designed to help you deal with NGS data, in particular Roche 454 and Illumina Solexa technologies. You will discover the new sequence formats, the new assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection (with the GATK pipeline), polymorphisms annotation and alignment visualization software. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-ca…","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["NGS Data Analysis","Variant analysis","Genomics (DNA-seq)"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":276,"name":"Introduction to Machine Learning Using R","shortName":"","description":"With the rise in high-throughput sequencing technologies, the volume of omics data has grown exponentially in recent times and a major issue is to mine useful knowledge from these data which are also heterogeneous in nature. Machine learning (ML) is a discipline in which computers perform automated learning without being programmed explicitly and assist humans to make sense of large and complex data sets. The analysis of complex high-volume data is not trivial and classical tools cannot be used to explore their full potential. Machine learning can thus be very useful in mining large omics datasets to uncover new insights that can advance the field of bioinformatics.\r\n\r\nThis 2-day course will introduce participants to the machine learning taxonomy and the applications of common machine learning algorithms to omics data. The course will cover the common methods being used to analyse different omics data sets by providing a practical context through the use of basic but widely used R libraries. The course will comprise a number of hands-on exercises and challenges where the participants will acquire a first understanding of the standard ML processes, as well as the practical skills in applying them on familiar problems and publicly available real-world data sets.","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":30,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":8,"name":"Elixir","url":"https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=json"},{"id":4,"name":"IFB - ELIXIR-FR","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=json"}],"organisedByTeams":[{"id":29,"name":"IFB Core","url":"https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=json"}],"logo_url":"https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1.png","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/415/?format=json"]},{"id":337,"name":"Analyse bioinformatique des séquences nucléiques et protéiques","shortName":"","description":"Bilille propose des formations en partenariat avec CNRS Formation Entreprises à destination des chercheur-euse-s, enseignant-e-s-chercheur-euse-s, ingénieur-e-s, technicien-ne-s en biologie et médecine. \r\n\r\nObjectifs :\r\n- Comprendre les méthodes de base à utiliser pour mener une analyse de séquences\r\n- Savoir exploiter les ressources bioinformatiques publiques\r\n- Savoir utiliser les logiciels d'alignement, de recherche d'homologie, d'annotation de gènes et de protéines","homepage":"https://cnrsformation.cnrs.fr/analyse-bioinformatique-sequences-nucleiques-proteiques?axe=161","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"","maxParticipants":10,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":1,"name":"CNRS formation entreprises","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=json"}],"organisedByTeams":[{"id":3,"name":"Bilille","url":"https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=json"}],"logo_url":"https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png","updated_at":"2024-12-09T17:40:45.108620Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/542/?format=json"]},{"id":195,"name":"NGS et Cancer (Canceropôle) : Analyse A-RNASeq","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/322/?format=json"]},{"id":338,"name":"Cycle « Analyse de données de séquençage à haut-débit » - Module 4/6 : Analyses ChIP-seq - version 2020","shortName":"","description":"Bilille propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé de 6 modules, à la carte : \r\n- Module 1: Analyses ADN\r\n- Module 2: Analyses de variants\r\n- Module 3 : Métagénomique\r\n- Module 4: ChIP-seq\r\n- Module 5: Analyses RNA-seq, bioinformatique\r\n- Module 6: Analyses RNA-seq, biostatistique\r\nLes fiches descriptives sont accessibles sur le site de Bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\nLes objectifs du module 4 sont :\r\n- Savoir détecter les pics et obtenir un signal\r\n- Comprendre les différentes structures de données\r\n- Savoir effectuer les contrôles qualité\r\n- Savoir effectuer une analyse d’enrichissement de motifs\r\n- Etre capable de préparer ses résultats pour leur annotation\r\n- Comprendre comment croiser plusieurs résultats de ChIP-seq","homepage":"https://bilille.univ-lille.fr/training/training-offer","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Galaxy - Basic usage"],"openTo":"Internal personnel","accessConditions":"Etre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation bilille « Initiation à Galaxy »)","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":66,"name":"University of Lille","url":"https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20Lille/?format=json"},{"id":56,"name":"INSERM","url":"https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=json"},{"id":52,"name":"CNRS","url":"https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=json"}],"organisedByTeams":[{"id":3,"name":"Bilille","url":"https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=json"}],"logo_url":"https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png","updated_at":"2024-12-09T17:40:36.320632Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/545/?format=json"]},{"id":374,"name":"Best practices in Bioinformatics","shortName":"Best practices BiRD cluster","description":"Objectives\r\n- Understand and implement the principles of reproducible science in analysis and development projects\r\n- Acquire basic commands necessary for optimal use of a HPC cluster\r\n\r\nCourse Content\r\n- Introduction to reproducibility\r\n- Best practices on code history and sharing: Git\r\n- Software environment : conda/mamba\r\n- Presentation of a HPC cluster\r\n- Introduction to workflows using Snakemake","homepage":"https://pf-bird.univ-nantes.fr/training/cluster/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Everyone","accessConditions":"- Familiarity with basic Linux commands or have completed the training course “Introduction to the command-line interface.”\r\n- Have an account on the GLiCID cluster.","maxParticipants":20,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-01-27T11:08:14.810708Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":7,"hoursHandsOn":null,"hoursTotal":7,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/602/?format=json","https://catalogue.france-bioinformatique.fr/api/event/748/?format=json","https://catalogue.france-bioinformatique.fr/api/event/641/?format=json"]},{"id":157,"name":"Cycle « Initiation à la bioinformatique » - Module 4/4 : Initiation à la reconstruction phylogénétique en biologie moléculaire","shortName":"","description":"Bilille propose un cycle de découverte de la bioinformatique à destination des chercheur·euses, enseignant·es-chercheur·euses, ingénieur·es, technicien·nes et doctorant·es en biologie. Aucun pré-requis en informatique n'est attendu.\r\nLe cycle est constitué de quatre modules de deux jours:\r\n- Banques de données et BLAST\r\n- Alignement de séquences\r\n- Prédiction de gènes et annotation de protéines\r\n- Initiation à la reconstruction phylogénétique en biologie moléculaire\r\nCes modules peuvent être suivis indépendamment, mais ont une cohérence. Suivre chaque module peut aider à une meilleure compréhension des modules suivants.\r\nLes fiches descriptives des différents modules sont accessibles sur le site web de Bilille.\r\nLes objectifs du module 4 sont :\r\n- Comprendre les grands principes de l’évolution moléculaire et de la reconstruction phylogénétique\r\n- Savoir construire des alignements informatifs pour une analyse phylogénétique\r\n- Comprendre les modèles phylogénétiques probabilistes, les méthodes d'inférence et savoir les appliquer\r\n- Savoir reconstruire des arbres phylogénétiques en Maximum de vraisemblance (ML) et par Inférence Bayésienne (BI)\r\n- Etre capable d’analyser avec un regard critique les résultats obtenus","homepage":"https://bilille.univ-lille.fr/training/training-offer","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Speciation dating","Tree of Life","Sequence analysis","Multiple sequence alignment"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"- Il est conseillé mais non nécessaire d’avoir suivi le module 1/4 « Banques de données et Blast » et le module 2/4 « Alignements de séquences » du cycle d'initiation à la bioinformatique.","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":3,"name":"Bilille","url":"https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=json"}],"logo_url":"https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png","updated_at":"2024-12-09T17:41:54.833188Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":304,"name":"Initiation à Galaxy","shortName":"Bilille Galaxy Init","description":"Bilille organise régulièrement des formations d'initiation à l'outil Galaxy d'une journée, destinée aux biologistes et médecins désirant découvrir le traitement bioinformatique de données via une interface conviviale.\r\n\r\nGalaxy est très répandu pour l’analyse de données omiques, telles que données de séquençage ou données de puces à ADN. \r\nC'est l'environnement qui est utilisé lors du cycle de formation “Analyse de données de séquençage à haut-débit”.","homepage":"https://bilille.univ-lille.fr/training/training-offer","is_draft":false,"costs":["Free"],"topics":[],"keywords":["Galaxy"],"prerequisites":[],"openTo":"Everyone","accessConditions":"Ouvert en priorité aux participants du cycle Analyse NGS organisé par Bilille.","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/763/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":3,"name":"Bilille","url":"https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=json"}],"logo_url":"https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png","updated_at":"2024-12-09T17:41:37.266949Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/741/?format=json","https://catalogue.france-bioinformatique.fr/api/event/676/?format=json"]},{"id":83,"name":"Projet AMIDEX \"spongex\"","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Autre"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Accès en local aux différents clusters\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":10,"name":"Formations Universitaire","shortName":"","description":"\nOrganisatrice et responsable du module « cellule épithéliale et cancer » de l’option B2PCR du M2 BCPP (Biologie Cellulaire, Physiologie et Pathologies : Université Paris 5, 11 et 12 (depuis 2010).\nCours et jury M1 et M2R Magistère Européen de Génétique – UE Génétique Moléculaire des Maladies Génétiques (depuis 2011).\n\n","homepage":"http://www.france-bioinformatique.fr","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":["Master"],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":192,"name":"Initiation à l’Analyse des données RNAseq sous l’environnement Galaxy","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/319/?format=json"]},{"id":13,"name":"Formation interne pipeline DEVA detection de variants par NGS","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":191,"name":"MicroScope: formation avancée","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/318/?format=json"]},{"id":174,"name":"Annotation and Analysis of Procaryotic genomes using the MicroScope platform","shortName":"","description":"","homepage":"","is_draft":false,"costs":["Priced"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/317/?format=json","https://catalogue.france-bioinformatique.fr/api/event/299/?format=json"]},{"id":407,"name":"Optimal use of GLiCID HPC cluster","shortName":"GLiCID","description":"Objectives\r\n- understand the infrastructure of GLiCID HPC cluster\r\n- understand the different types of storage and computing nodes\r\n- launch computing tasks via the Slurm scheduler\r\n\r\nCourse Content\r\n- configuration of your account and connection with ssh on GLiCID (ssh keys)\r\n- navigate through the storage spaces\r\n- use slurm to launch a job\r\n- manage the software environments (micromamba, guix, modules)\r\n- use workflow managers on GLiCID","homepage":"https://pf-bird.univ-nantes.fr/training/cluster/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":[],"openTo":"Everyone","accessConditions":"Prerequisites\r\n- Familiarity with basic Linux commands or have completed the training course “Introduction to the command-line interface.”\r\n- Have an account on the GLiCID cluster","maxParticipants":20,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":16,"name":"BiRD","url":"https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=json"}],"logo_url":"https://bird.univ-nantes.io/website/images/logo/logo.svg","updated_at":"2026-03-02T16:36:38.694735Z","audienceTypes":["Professional (continued)"],"audienceRoles":["All"],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/794/?format=json"]},{"id":27,"name":"Perl avancé","shortName":"","description":"\nObjectifs\n\nAller plus loin avec Perl afin d’être autonome pour des manipulations complexes visant à extraire et reformater des données issues de fichiers texte.\n\n \n \n \n \nProgramme\n\n- Expressions régulières\n- Fonctions\n- Prise en main de Bioperl\n \n \nIllustration avec des exercices de manipulation de fichiers de séquences et de fichiers de résultats d’outils bionformatiques.\n \n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","Perl Langage"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/250/?format=json"]}]}