{"count":388,"next":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=140&ordering=openTo","previous":"https://catalogue.france-bioinformatique.fr/api/training/?format=json&limit=20&offset=100&ordering=openTo","results":[{"id":125,"name":"Cluster  ","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","Autres langages"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":99,"name":"Formation ARCAD SP1-SP4, Analyse de données de polymorphisme, Montpellier","shortName":"","description":"09-13 Mai 2011\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Bioinformatics and Plant Genomics"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":79,"name":"Phylogénie moléculaire","shortName":"","description":"\nLes objectifs sont :\n1. Acquérir des connaissances théoriques et pratiques en phylogénie moléculaire.\n2. Être autonome dans la conduite d'une analyse phylogénétique.\n3. Maîtriser le choix, le paramétrage et l'exploitation des résultats des programmes de phylogénie.\nhttps://cnrsformation.cnrs.fr/\n\n","homepage":"http://cnrsformation.cnrs.fr/stage-17007-Phylogenie-moleculaire-%28Montpellier%2…","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Speciation dating","Selection Detection","Supertrees and Reconciliations","Phylogenomics","Genes and genomes"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"S'acquitter des frais d'inscription, être familiarisé avec les banques de données de séquences, avoir déjà utilisé les logiciels de base en bioinformatique, connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres), avoir des notions de programmation.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/263/?format=json"]},{"id":78,"name":"Formation des post-doctorants","shortName":"","description":"Pour la recherche et l’annotation des IS.\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Metagenomics"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Gratuit\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":124,"name":"Intégration d’outils dans la plateforme web GALAXY ","shortName":"","description":"","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Galaxy"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":103,"name":"Biostatistique avec R","shortName":"","description":"Apprendre à se servir du logiciel R dans le contexte de l’analyse de données biologiques tout en consolidant ses connaissances de base en biostatistique\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","R Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Personnel IHU-A-ICM, gratuit\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":290,"name":"NGS data analysis on the command line","shortName":"NGS-analysis-cli","description":"This hands-on course will teach bioinformatic approaches for analyzing Illumina sequencing data. Our goal is to introduce the command line skills you need to make the most of your NGS data. \r\nDuring this 4-day training we will first introduce the Linux environment, shell commands and basic R scripting.  And then we will focus on two NGS data analyses -- small RNA-seq and RNA-seq -- based on published datasets from the model organism Arabidopsis thaliana","homepage":"https://www.ibmp.cnrs.fr/bioinformatics-trainings/","is_draft":false,"costs":["Free to academics"],"topics":["http://edamontology.org/topic_3170","http://edamontology.org/topic_3168","http://edamontology.org/topic_0102","http://edamontology.org/topic_2269"],"keywords":[],"prerequisites":["none"],"openTo":"Internal personnel","accessConditions":"This training is dedicated to academics working in a laboratory of Unistra/CNRS.","maxParticipants":12,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/124/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[{"id":79,"name":"IBMP","url":"https://catalogue.france-bioinformatique.fr/api/organisation/IBMP/?format=json"}],"organisedByTeams":[{"id":14,"name":"BiGEst","url":"https://catalogue.france-bioinformatique.fr/api/team/BiGEst/?format=json"}],"logo_url":null,"updated_at":"2024-01-22T14:51:37.215331Z","audienceTypes":[],"audienceRoles":["Biologists","Bioinformaticians"],"difficultyLevel":"Novice","trainingMaterials":[],"learningOutcomes":"Applied Knowledge (Know-how):\r\n- Basic proficiency at the Linux command line prompt\r\n- Basic proficiency of R (environment, objects, graphs) \r\n- Next generation sequencing (NGS) file formats; reference genomes - Mapping NGS read data to reference genomes (bowtie, samtools)\r\n- Small RNA-seq analysis; epigenomics applications (ShortStack)\r\n- RNA-seq for transcriptomics; differential gene expression analysis (HISAT2, DESeq2) - Data wrangling and visualization in R (Rstudio, ggplot2)","hoursPresentations":12,"hoursHandsOn":16,"hoursTotal":28,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/503/?format=json","https://catalogue.france-bioinformatique.fr/api/event/504/?format=json","https://catalogue.france-bioinformatique.fr/api/event/589/?format=json","https://catalogue.france-bioinformatique.fr/api/event/454/?format=json","https://catalogue.france-bioinformatique.fr/api/event/660/?format=json"]},{"id":77,"name":"Formation de chercheurs","shortName":"","description":" lors de Workshop (organisation de séances de travaux pratiques)\n pour des formations individuelles\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Metagenomics"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Gratuit\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":76,"name":"Master Bioinfo Toulouse ","shortName":"","description":"Organized by Sigenae and Bioinfo Genotoul platforms.\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":[],"prerequisites":["Master"],"openTo":"Internal personnel","accessConditions":"","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":31,"name":"Fouille de texte","shortName":"","description":"http://migale.jouy.inra.fr/?q=fr/formations\n","homepage":"","is_draft":false,"costs":[],"topics":[],"keywords":["Autre"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"http://migale.jouy.inra.fr/?q=fr/formations\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":349,"name":"Reproducible Research","shortName":"","description":"The following topics and tools are covered in the course:\r\n\r\n    Data management\r\n    Project organisation\r\n    Git\r\n    Conda\r\n    Snakemake\r\n    Nextflow\r\n    R Markdown\r\n    Jupyter\r\n    Docker\r\n    Singularity\r\n\r\nAt the end of the course, students should be able to:\r\n\r\n    Use good practices for data analysis and management\r\n    Clearly organise their bioinformatic projects\r\n    Use the version control system Git to track and collaborate on code\r\n    Use the package and environment manager Conda\r\n    Use and develop workflows with Snakemake and Nextflow\r\n    Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n    Use Docker and Singularity to distribute containerized computational environments","homepage":"https://southgreenplatform.github.io/training_reproducible_research/","is_draft":false,"costs":["Free"],"topics":[],"keywords":[],"prerequisites":["Linux - Basic Knowledge"],"openTo":"Internal personnel","accessConditions":"Open to South Green close collaborators","maxParticipants":20,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[{"id":24,"name":"South Green","url":"https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=json"}],"logo_url":"https://southgreenplatform.github.io/trainings//images/southgreenlong.png","updated_at":"2023-12-04T15:16:00.921744Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"Novice","trainingMaterials":[],"learningOutcomes":"At the end of the course, students should be able to:\r\n\r\n    Use good practices for data analysis and management\r\n    Clearly organise their bioinformatic projects\r\n    Use the version control system Git to track and collaborate on code\r\n    Use the package and environment manager Conda\r\n    Use and develop workflows with Snakemake and Nextflow\r\n    Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n    Use Docker and Singularity to distribute containerized computational environments","hoursPresentations":8,"hoursHandsOn":13,"hoursTotal":21,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/567/?format=json"]},{"id":75,"name":"Galaxy: metagenomic: sequence analysis of amplicons from MiSeq and 454 sequencing with FROGS with Galaxy first step and statistics","shortName":"","description":"This training session, organized by Bioinfo Genotoul, Sigenae, NED (GenPhySE) and TWB, is designed to help you to deal with NGS data of 16S, 18S ... DNA produced with MiSeq from Illumina and Roche 454 technologies in the Galaxy workbench.\nYou will discover how to use our Galaxy instance, clean reads, clusterize them, do the taxonomic affiliation and perform statistics to interpret your results.\nPrerequisites: knowledge of R or in another programming language\n","homepage":"http://bioinfo.genotoul.fr/index.php","is_draft":false,"costs":[],"topics":[],"keywords":["Galaxy"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"An account on the platform Bioinfo Genotoul is necessary (request a form on the website), you need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":29,"name":"Initiation à Python","shortName":"","description":"\nObjectifs\n\nInitiation à la programmation.\nRéalisation de tâches simples d'extractions d'informations.\nIdentifier les possibilités offertes par l'écriture de quelques lignes de codes.\n \n\n \n \n \n \nProgramme\n\n• Présentation de Python\n• Variables Python\n• Structures de contrôle\n• Réalisation de programmes simples\n• Gestion de fichiers\n• Fonctions\nIllustration avec des exercices de manipulation de fichiers de séquences\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","Python Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/252/?format=json"]},{"id":73,"name":"Galaxy : RNASeq alignment and transcripts assemblies","shortName":"","description":"As the command line training but with Galaxy. Organized jointly by the Sigenae and the Bioinfo Genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-and-transcripts-ass…","is_draft":false,"costs":[],"topics":[],"keywords":["NGS Data Analysis","Analysis of RNAseq data","Gene expression differential analysis","Galaxy","Transcript and transcript variant analysis","Transcriptomics (RNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":72,"name":"Galaxy : Reads alignment and SNP calling","shortName":"","description":"As the command line training but with Galaxy. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-varia…","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["NGS Data Analysis","Galaxy","Variant analysis","Genomics (DNA-seq)","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/262/?format=json"]},{"id":71,"name":"Galaxy : first step","shortName":"","description":"Galaxy is a workbench available for biologists from Sigenae Platform. Galaxy objectives are:\n    First, making bioinfo Linux tools accessible to biologists.\n    Then, it is possible to add Linux tools by developpers into Galaxy workbench.\n    Then, Galaxy is used to hide the complexity of the infrastructure and to allow creation, execution and sharing of workflows.\nYou will acquire the following competencies required for the other Galaxy trainning:\n    Login to Galaxy: Galaxy Workbench (To access to Galaxy, you need to have an LDAP Genotoul login and password).\n    Begin to use some tools provided (BWA, SAM tools, FastQC).\n    Work on files.\nOrganized jointly by the Sigenae and the Bioinfo Genotoul platform.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/first-step-with-galaxy/","is_draft":false,"costs":["Priced"],"topics":[],"keywords":["Web portals","Galaxy","Interfaces","NGS Sequencing Data Analysis"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":70,"name":"Phylogenomy and selection pressure ","shortName":"","description":"This training session is organized by the bios4Biol CATI.\nMorning : phylogenomics\nThe morning course will provide insigths about sampling problems in phylogenomics studies (genes, species) and methodological aspects of phylogenomics studies with two major focus on super-matrix and super-tree methods.\nAfternoon : selection pressure\nThe afternoon course will be dedicated to the use of the PAML4 package in order to study selection pressures in a sequence alignment.\n","homepage":"http://bioinfo.genotoul.fr/index.php/events/phylogenomics-and-selection-pressure…","is_draft":false,"costs":[],"topics":[],"keywords":["Phylogeny","Evolution and Phylogeny","Molecular evolution","Selection Detection","Phylogenomics","Genes and genomes"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":[]},{"id":28,"name":"Initiation à R","shortName":"","description":"\nObjectifs\n\n- Présenter le langage de programmation R et ses principes.\n- Utiliser les principales fonctionnalités de ce langage pour effectuer des calculs mathématiques, statistiques ou des représentations graphiques.\n- Attention : ce module n'est ni un module de statistique, ni un module d'analyse statistique des données.\n\nProgramme\n\n- Structures et manipulation de données.\n- Principaux éléments du langage de programmation (boucle, fonctions…).\n- Différentes représentations graphiques de données/résultats (plot, histogramme, boxplot).\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","R Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/251/?format=json"]},{"id":367,"name":"Introduction à l'analyse de données de séquençage avec contrôle qualité et alignement sur un génome de référence avec Galaxy","shortName":"","description":"L’objectif de cette formation est de se familiariser avec les premières étapes communes à toutes les analyses de données de séquençage : le contrôle qualité des données et l’alignement sur un génome de référence. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main des ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\nAprès une introduction aux données de séquençage, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité de données de séquençage,\r\n- améliorer la qualité de données de séquençage\r\n- aligner des données sur un génome de référence","homepage":"","is_draft":false,"costs":["Free to academics"],"topics":["http://edamontology.org/topic_0091","http://edamontology.org/topic_0102"],"keywords":["Quality Control","Galaxy","Mapping"],"prerequisites":["Galaxy - Basic usage"],"openTo":"Internal personnel","accessConditions":"Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy","maxParticipants":null,"contacts":["https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=json","https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=json"],"elixirPlatforms":[],"communities":[],"sponsoredBy":[{"id":1,"name":"CNRS - IFB","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=json"},{"id":16,"name":"Université Clermont Auvergne","url":"https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=json"}],"organisedByOrganisations":[{"id":87,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=json"},{"id":96,"name":"Mésocentre Clermont-Auvergne","url":"https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=json"}],"organisedByTeams":[{"id":31,"name":"AuBi","url":"https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=json"}],"logo_url":"https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175","updated_at":"2024-02-08T11:22:59.733596Z","audienceTypes":["Undergraduate","Graduate","Professional (initial)","Professional (continued)"],"audienceRoles":["Researchers","Life scientists","Biologists"],"difficultyLevel":"Novice","trainingMaterials":[{"id":128,"name":"Mapping with Galaxy","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Mapping%20with%20Galaxy/?format=json"},{"id":127,"name":"Quality Control with Galaxy","url":"https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Quality%20Control%20with%20Galaxy/?format=json"}],"learningOutcomes":"At the end of the tutorial, learners would be able to:\r\n- Assess short reads FASTQ quality using FASTQE 🧬😎 and FastQC\r\n- Assess long reads FASTQ quality using Nanoplot and PycoQC\r\n- Perform quality correction with Cutadapt (short reads)\r\n-  Summarise quality metrics MultiQC\r\n- Process single-end and paired-end data\r\n- Define what mapping is\r\n- Perform mapping of reads on a reference genome\r\n- Evaluate the mapping output","hoursPresentations":1,"hoursHandsOn":2,"hoursTotal":3,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/593/?format=json"]},{"id":30,"name":"Python avancé","shortName":"","description":"\nObjectifs\n\nEtre autonome pour des manipulations simples visant à extraire, reformater des données issues de fichiers texte.\n \n\n \n \n \n \nProgramme\n\n- Expressions régulières\n- Gestion des erreurs\n- Biopython\n- Réalisation de programmes simples\n","homepage":"http://migale.jouy.inra.fr/","is_draft":false,"costs":[],"topics":[],"keywords":["Programming Languages & Computer Sciences","Python Language"],"prerequisites":[],"openTo":"Internal personnel","accessConditions":"Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n","maxParticipants":null,"contacts":[],"elixirPlatforms":[],"communities":[],"sponsoredBy":[],"organisedByOrganisations":[],"organisedByTeams":[],"logo_url":"","updated_at":"2022-06-02T11:50:50.812642Z","audienceTypes":[],"audienceRoles":[],"difficultyLevel":"","trainingMaterials":[],"learningOutcomes":"","hoursPresentations":null,"hoursHandsOn":null,"hoursTotal":null,"personalised":null,"event_set":["https://catalogue.france-bioinformatique.fr/api/event/253/?format=json"]}]}