Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=80&ordering=-openTo
{ "count": 370, "next": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=100&ordering=-openTo", "previous": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=60&ordering=-openTo", "results": [ { "id": 251, "name": "Survival Guide for Perl applied to Bioinformatics", "shortName": "", "description": " \n\n\t\t\tThis course provides an introduction to programming using Perl and at the end of the training, participants could write simple Perl programs to handle biological data and to undertstand more complex Perl programs written by others.\n\t\t\t\nPrerequisites\nBasic knowledge of Linux (Linux for dummies required)\n\nProgram\nPerl data structures (scalar,arrays, hashes)\nStructure control ( loops)\nBasic functions, and operators.\nWriting and running your own program\nPassing options and files to his own script.\nRegular expressions\n\n\nLearning objectives\nWriting simple Perl programs to analyze data files\nUnderstanding Perl programs written by others\nUsing Perl basic syntax and modules in their own script\nRun programs from their script, parsing and extracting data from data files\n\n\nInstructors\n\n\nChristine Tranchant - christine.tranchant@ird.fr\nFrançois Sabot - francois.sabot@ird.fr\nNdomassi tando - ndomassi.tando@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//perl/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 13, "name": "Formation permanente IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=api" } ], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/383/?format=api" ] }, { "id": 347, "name": "Introduction to Microbial Comparative Genomics", "shortName": "", "description": "This course offers an introduction to microbial genomics analysis.\r\nIt includes 5 issues: assembly, genome annotation, circos visualization, pan-genome construction, pan-GWAS.", "homepage": "https://southgreenplatform.github.io/trainings//bacterialGenomics/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "genomics", "Structural genomics", "Genome analysis" ], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/174/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/771/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/772/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/773/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T14:54:55.468140Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Intermediate", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 5, "hoursHandsOn": 5, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/558/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/561/?format=api" ] }, { "id": 252, "name": "Introduction to High-performance computing", "shortName": "", "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/384/?format=api" ] }, { "id": 326, "name": "Principes FAIR pour la gestion des données d'une plateforme IBISA", "shortName": "FAIR data IBISA", "description": "Cette session de formation a pour but de former des responsables et membres de plateformes IBISA aux principes FAIR de gestion des données .\r\nLa formation se déroule sur 2 jours avec une alternance de présentation générales, et techniques, témoignages et ateliers pratiques pour travailler sur différents sujets : PGD de structure, métadonnées, sécurité des données,...etc.\r\nA la fin de cette formation auront \r\n- acquis des connaissances théoriques et pratiques sur la gestion selon les principes FAIR de leurs données dans le contexte de la Science Ouverte\r\n- identifié des pistes d'amélioration pour la gestion des données de leur plateforme.", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=16", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3420", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_3571" ], "keywords": [ "Données" ], "prerequisites": [ "Biologists" ], "openTo": "Internal personnel", "accessConditions": "private for IBISA platform staff", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/162/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB-core/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png", "updated_at": "2023-08-22T14:25:08.237204Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [], "difficultyLevel": "Intermediate", "trainingMaterials": [], "learningOutcomes": "A la fin de cette formation, les participants connaîtront et pourront mettre en œuvre les principes de la science ouverte pour gérer leurs jeux de données dans un projet :\r\n- Les principes fondamentaux de l’Open Data en biologie et santé, y compris dans ses aspects juridiques ;\r\n- Les bonnes pratiques et outils de gestion des données d’un projet en bioinformatique, en lien avec les ressources de l’infrastructure IFB ;\r\n- Le PGD : séances théoriques et pratiques de construction d’un PGD sur des exemples de jeux de données omiques ;\r\n- Le choix des métadonnées : panorama des ressources existantes pour choisir des métadonnées et mise en pratique pour annoter des jeux de données omiques en vue de la publication des données dans une banque internationale ou un dataverse institutionnel.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/627/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/513/?format=api" ] }, { "id": 96, "name": "Formation introduction à la bioinformatique, Dassa", "shortName": "", "description": "Juillet 2013\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 370, "name": "Introduction à l'analyse de données de métabarcoding 16S avec Galaxy", "shortName": "", "description": "L’objectif de cette formation est de se familiariser avec les étapes et les outils pour analyses de données de métabarcoding 16S. Nous proposons au personnel non-bioinformaticien de les accompagner dans la prise en main de ces étapes d’analyses en utilisant la plateforme de bio-analyse Galaxy. \r\n\r\nAprès une introduction au métabarcoding 16S, une session pratique sur la plateforme Galaxy couvrira comment :\r\n- évaluer la qualité de données de métabarcoding ,\r\n- analyser et visualiser une communauté microbienne à partir de données de métabarcoding 16S", "homepage": "", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_3697", "http://edamontology.org/topic_0637" ], "keywords": [ "Galaxy", "Metabarcoding" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Formation ouverte au personnel de l’UCA & Associés\r\nAvoir un ordinateur portable et un accès wifi eduroam\r\nAvoir un compte sur la plateforme Galaxy (Faire une demande le cas échéant sur hub.mesocentre.uca.fr)\r\nÊtre familier avec Galaxy", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/677/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" }, { "id": 16, "name": "Université Clermont Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Universit%C3%A9%20Clermont%20Auvergne/?format=api" } ], "organisedByOrganisations": [ { "id": 87, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/AuBi/?format=api" }, { "id": 96, "name": "Mésocentre Clermont-Auvergne", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/M%C3%A9socentre%20Clermont-Auvergne/?format=api" } ], "organisedByTeams": [ { "id": 31, "name": "AuBi", "url": "https://catalogue.france-bioinformatique.fr/api/team/AuBi/?format=api" } ], "logo_url": "https://mesocentre.uca.fr/medias/photo/logoaubi-2019minus_1553844844490-jpg?ID_FICHE=41175", "updated_at": "2024-02-08T11:18:18.945136Z", "audienceTypes": [ "Undergraduate", "Graduate", "Professional (initial)", "Professional (continued)" ], "audienceRoles": [ "Researchers", "Life scientists", "Biologists" ], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 131, "name": "16S Microbial Analysis with mothur", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/16S%20Microbial%20Analysis%20with%20mothur/?format=api" } ], "learningOutcomes": "At the end of the tutorial, learners would be able to:\r\n- Analyze of 16S rRNA sequencing data using the mothur toolsuite in Galaxy\r\n- Using a mock community to assess the error rate of your sequencing experiment\r\n- Visualize sample diversity using Krona and Phinch", "hoursPresentations": 1, "hoursHandsOn": 2, "hoursTotal": 3, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/595/?format=api" ] }, { "id": 68, "name": "Sequences alignment and phylogeny ", "shortName": "", "description": "This training session is organized by the bios4Biol CATI and the genotoul bioinfo platform and aims at initiating participants to molecular phylogenetics studies.\nYou will discover how to build a sequence dataset, to align sequences, to edit and refine the resulting alignment.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/sequences-alignment-phylogeny/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 348, "name": "Advanced HPC Trainings", "shortName": "", "description": "This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.", "homepage": "https://southgreenplatform.github.io/trainings//Advanced_HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "HPC", "SLURM" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Oprn to South Green close collaborators", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 85, "name": "IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=api" } ], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T14:46:58.108350Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "All" ], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/557/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/565/?format=api" ] }, { "id": 69, "name": "Methods for phylogenetics trees construction", "shortName": "", "description": "This training session is organized by the bios4Biol CATI and aims at training participants to construct and interpret phylogenetic trees.\nYou will discover how to choose an evolutionary model and a phylogenetic inference method (among distance, parsimony, maximum likelihood and Bayesian methods) and how to evaluate the robustness of a tree using bootstrap.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/methods-for-phylogenetic-trees-const…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny", "Evolution and Phylogeny", "Molecular evolution", "Genes and genomes" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 70, "name": "Phylogenomy and selection pressure ", "shortName": "", "description": "This training session is organized by the bios4Biol CATI.\nMorning : phylogenomics\nThe morning course will provide insigths about sampling problems in phylogenomics studies (genes, species) and methodological aspects of phylogenomics studies with two major focus on super-matrix and super-tree methods.\nAfternoon : selection pressure\nThe afternoon course will be dedicated to the use of the PAML4 package in order to study selection pressures in a sequence alignment.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/phylogenomics-and-selection-pressure…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny", "Evolution and Phylogeny", "Molecular evolution", "Selection Detection", "Phylogenomics", "Genes and genomes" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 71, "name": "Galaxy : first step", "shortName": "", "description": "Galaxy is a workbench available for biologists from Sigenae Platform. Galaxy objectives are:\n First, making bioinfo Linux tools accessible to biologists.\n Then, it is possible to add Linux tools by developpers into Galaxy workbench.\n Then, Galaxy is used to hide the complexity of the infrastructure and to allow creation, execution and sharing of workflows.\nYou will acquire the following competencies required for the other Galaxy trainning:\n Login to Galaxy: Galaxy Workbench (To access to Galaxy, you need to have an LDAP Genotoul login and password).\n Begin to use some tools provided (BWA, SAM tools, FastQC).\n Work on files.\nOrganized jointly by the Sigenae and the Bioinfo Genotoul platform.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/first-step-with-galaxy/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Web portals", "Galaxy", "Interfaces", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 72, "name": "Galaxy : Reads alignment and SNP calling", "shortName": "", "description": "As the command line training but with Galaxy. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-varia…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy", "Variant analysis", "Genomics (DNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/262/?format=api" ] }, { "id": 73, "name": "Galaxy : RNASeq alignment and transcripts assemblies", "shortName": "", "description": "As the command line training but with Galaxy. Organized jointly by the Sigenae and the Bioinfo Genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-and-transcripts-ass…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Analysis of RNAseq data", "Gene expression differential analysis", "Galaxy", "Transcript and transcript variant analysis", "Transcriptomics (RNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 75, "name": "Galaxy: metagenomic: sequence analysis of amplicons from MiSeq and 454 sequencing with FROGS with Galaxy first step and statistics", "shortName": "", "description": "This training session, organized by Bioinfo Genotoul, Sigenae, NED (GenPhySE) and TWB, is designed to help you to deal with NGS data of 16S, 18S ... DNA produced with MiSeq from Illumina and Roche 454 technologies in the Galaxy workbench.\nYou will discover how to use our Galaxy instance, clean reads, clusterize them, do the taxonomic affiliation and perform statistics to interpret your results.\nPrerequisites: knowledge of R or in another programming language\n", "homepage": "http://bioinfo.genotoul.fr/index.php", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "An account on the platform Bioinfo Genotoul is necessary (request a form on the website), you need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 349, "name": "Reproducible Research", "shortName": "", "description": "The following topics and tools are covered in the course:\r\n\r\n Data management\r\n Project organisation\r\n Git\r\n Conda\r\n Snakemake\r\n Nextflow\r\n R Markdown\r\n Jupyter\r\n Docker\r\n Singularity\r\n\r\nAt the end of the course, students should be able to:\r\n\r\n Use good practices for data analysis and management\r\n Clearly organise their bioinformatic projects\r\n Use the version control system Git to track and collaborate on code\r\n Use the package and environment manager Conda\r\n Use and develop workflows with Snakemake and Nextflow\r\n Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n Use Docker and Singularity to distribute containerized computational environments", "homepage": "https://southgreenplatform.github.io/training_reproducible_research/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 20, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:16:00.921744Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "At the end of the course, students should be able to:\r\n\r\n Use good practices for data analysis and management\r\n Clearly organise their bioinformatic projects\r\n Use the version control system Git to track and collaborate on code\r\n Use the package and environment manager Conda\r\n Use and develop workflows with Snakemake and Nextflow\r\n Use R Markdown and Jupyter Notebooks to document and generate automated reports for their analyses\r\n Use Docker and Singularity to distribute containerized computational environments", "hoursPresentations": 8, "hoursHandsOn": 13, "hoursTotal": 21, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/567/?format=api" ] }, { "id": 76, "name": "Master Bioinfo Toulouse ", "shortName": "", "description": "Organized by Sigenae and Bioinfo Genotoul platforms.\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [ "Master" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 77, "name": "Formation de chercheurs", "shortName": "", "description": " lors de Workshop (organisation de séances de travaux pratiques)\n pour des formations individuelles\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Metagenomics" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Gratuit\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 78, "name": "Formation des post-doctorants", "shortName": "", "description": "Pour la recherche et l’annotation des IS.\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Metagenomics" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Gratuit\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 79, "name": "Phylogénie moléculaire", "shortName": "", "description": "\nLes objectifs sont :\n1. Acquérir des connaissances théoriques et pratiques en phylogénie moléculaire.\n2. Être autonome dans la conduite d'une analyse phylogénétique.\n3. Maîtriser le choix, le paramétrage et l'exploitation des résultats des programmes de phylogénie.\nhttps://cnrsformation.cnrs.fr/\n\n", "homepage": "http://cnrsformation.cnrs.fr/stage-17007-Phylogenie-moleculaire-%28Montpellier%2…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny", "Evolution and Phylogeny", "Molecular evolution", "Speciation dating", "Selection Detection", "Supertrees and Reconciliations", "Phylogenomics", "Genes and genomes" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "S'acquitter des frais d'inscription, être familiarisé avec les banques de données de séquences, avoir déjà utilisé les logiciels de base en bioinformatique, connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres), avoir des notions de programmation.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/263/?format=api" ] }, { "id": 189, "name": "European Galaxy Developer Workshop", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/315/?format=api" ] } ] }
