Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=80&ordering=-learningOutcomes
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christine.tranchant@ird.fr\nFrançois Sabot - francois.sabot@ird.fr\nNdomassi tando - ndomassi.tando@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//perl/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 13, "name": "Formation permanente IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=api" } ], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/383/?format=api" ] }, { "id": 396, "name": "Metagenomics and Metatranscriptomics initiation", "shortName": "Metagenomics", "description": "Présentation de la formation\r\nA la demande du laboratoire d'Ecologie Microbienne de Lyon, l'équipe Formation de l'IFB organise une session de formation de deux jours sous Galaxy pour l'analyse de données de métagénomique et métatranscriptomique.\r\n\r\nObjectifs pédagogiques\r\nA la fin de cette formation, les participants auront \r\n\r\n- acquis des connaissances théoriques et pratiques sur les méthodes et objectifs d'une analyse en métagénomique et métatranscriptomique\r\n\r\n - réalisé une analyse de données de données métataxonomique, métagénomique shotgun et métatranscriptomique sous l'environnement Galaxy et sur des données fournies par l'équipe pédagogique\r\n\r\n- choisi et initié une analyse sur un jeu de données de leur choix en bénéficiant de l'encadrement de l'équipe pédagogique (Bring Your Own Data sessions)", "homepage": "https://moodle.france-bioinformatique.fr/course/view.php?id=40", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_0637", "http://edamontology.org/topic_3941", "http://edamontology.org/topic_3174" ], "keywords": [], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/116/?format=api" ], "elixirPlatforms": [ { "id": 1, "name": "Training", "url": "https://catalogue.france-bioinformatique.fr/api/elixirplatform/Training/?format=api" } ], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://moodle.france-bioinformatique.fr/pluginfile.php/1/core_admin/logocompact/300x300/1654772049/IFB-HAUT-COULEUR-PETIT.png", "updated_at": "2025-07-16T11:33:24.922633Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Life scientists" ], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/726/?format=api" ] }, { "id": 156, "name": "Python for biology", "shortName": "", "description": "", "homepage": "https://cnrsformation.cnrs.fr/stage-17266-Python-pour-la-biologie.html", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Sequence Algorithm", "Python Language", "Sequence analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "CNRS fee-based training\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 375, "name": "RNASeq Analysis", "shortName": "RNASeq Analysis", "description": "Objectives\r\n- Understand the key steps in RNASeq data analysis for a differential expression study\r\n- Know how to perform command-line analysis using Snakemake.\r\n\r\nPedagogical Content\r\nDay 1\r\n- Principle of RNASeq technology: objectives and experimental design.\r\n- Data quality assessment (FastQC, MultiQC).\r\n- Sequence alignment to a reference genome (STAR).\r\n\r\nDay 2\r\n- Differential gene expression analysis (HTSeqCount, DESeq2).\r\n- Functional annotation (GO, Kegg).\r\n- Using the Snakemake workflow system.\r\n- Comparison between RNASeq and 3’SRP methods.\r\n\r\nThe theoretical part is followed by a pipeline run step-by-step on a test dataset. \r\nIt will be possible to start an analysis on your own data.", "homepage": "https://pf-bird.univ-nantes.fr/training/rnaseq/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Familiarity with basic Linux commands.", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 16, "name": "BiRD", "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api" } ], "logo_url": null, "updated_at": "2024-02-08T16:07:26.347245Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 7, "hoursHandsOn": 7, "hoursTotal": 14, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/603/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/640/?format=api" ] }, { "id": 384, "name": "EBAII - Ecole de Bioinformatique niveau intermédiaire", "shortName": "EBAII N2", "description": "Objectifs: L’école s’articulera autour de trois ateliers thématiques en session parallèle (RNA-seq, ChIP-seq, variants DNA-seq), et abordera la visualisation et l’intégration des données. \r\n\r\nEnvironnement de travail: L’ensemble de la formation reposera sur l’utilisation de commandes en ligne (terminal Linux) et du langage R. \r\n\r\nPrérequis: Les candidats doivent avoir acquis les compétences enseignées durant l’école de niveau débutant: un niveau de base en ligne de commande, R, et (au choix) RNA-seq, ChIP-seq ou variants DNA-seq.", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0092", "http://edamontology.org/topic_3168", "http://edamontology.org/topic_0091" ], "keywords": [ "Biostatistics", "Sequence analysis", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "La formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS) avec un niveau de base en ligne de commande, R, et (au choix) RNA-seq, ChIP-seq ou variants DNA-seq.", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://www.sb-roscoff.fr/sites/www.sb-roscoff.fr/files/styles/large/public/images/station-biologique-roscoff-roscoff-4404.jpg", "updated_at": "2024-12-05T07:33:48.573507Z", "audienceTypes": [], "audienceRoles": [ "Biologists" ], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/644/?format=api" ] }, { "id": 321, "name": "Genopole Autumn School", "shortName": "", "description": "Cette formation est dédiée aux chercheurs, ingénieurs et doctorants et dispensée en anglais par des experts internationaux de la génomique.\r\nLes points forts de la formation :\r\n\r\n Des sessions de formation pratiques aux outils d’analyse génomique\r\n Des experts des grands centres nationaux et internationaux (Université d’Evry – Paris-Saclay, Inrae, CEA, CNRS, Université du Luxembourg, EMBL-EBI)\r\n Format résidentiel tout inclus dans un cadre accueillant et propice au networking\r\n Effectif limité à 15 participants pour une qualité optimale des sessions pratiques\r\n Formation éligible à la prise en charge employeurs ou OPCO", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-11-14T16:38:22.898523Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/501/?format=api" ] }, { "id": 68, "name": "Sequences alignment and phylogeny ", "shortName": "", "description": "This training session is organized by the bios4Biol CATI and the genotoul bioinfo platform and aims at initiating participants to molecular phylogenetics studies.\nYou will discover how to build a sequence dataset, to align sequences, to edit and refine the resulting alignment.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/sequences-alignment-phylogeny/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 348, "name": "Advanced HPC Trainings", "shortName": "", "description": "This course continues the explanation on how to work on HPC Southgreen clusters. It is intended for experienced users, with the goals of improving LC user productivity and minimizing the obstacles. New notions and tools are presented such as job arrays, basic softwares installation,module environment and singularity. All these notions will be developped.", "homepage": "https://southgreenplatform.github.io/trainings//Advanced_HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [ "HPC", "SLURM" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Oprn to South Green close collaborators", "maxParticipants": 20, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/589/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 85, "name": "IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IRD/?format=api" } ], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T14:46:58.108350Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "All" ], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/557/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/565/?format=api" ] }, { "id": 69, "name": "Methods for phylogenetics trees construction", "shortName": "", "description": "This training session is organized by the bios4Biol CATI and aims at training participants to construct and interpret phylogenetic trees.\nYou will discover how to choose an evolutionary model and a phylogenetic inference method (among distance, parsimony, maximum likelihood and Bayesian methods) and how to evaluate the robustness of a tree using bootstrap.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/methods-for-phylogenetic-trees-const…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny", "Evolution and Phylogeny", "Molecular evolution", "Genes and genomes" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 70, "name": "Phylogenomy and selection pressure ", "shortName": "", "description": "This training session is organized by the bios4Biol CATI.\nMorning : phylogenomics\nThe morning course will provide insigths about sampling problems in phylogenomics studies (genes, species) and methodological aspects of phylogenomics studies with two major focus on super-matrix and super-tree methods.\nAfternoon : selection pressure\nThe afternoon course will be dedicated to the use of the PAML4 package in order to study selection pressures in a sequence alignment.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/phylogenomics-and-selection-pressure…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny", "Evolution and Phylogeny", "Molecular evolution", "Selection Detection", "Phylogenomics", "Genes and genomes" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 14, "name": "Formation interne pipeline RNASeq", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Analysis of RNAseq data" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 72, "name": "Galaxy : Reads alignment and SNP calling", "shortName": "", "description": "As the command line training but with Galaxy. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-varia…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy", "Variant analysis", "Genomics (DNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/262/?format=api" ] }, { "id": 73, "name": "Galaxy : RNASeq alignment and transcripts assemblies", "shortName": "", "description": "As the command line training but with Galaxy. Organized jointly by the Sigenae and the Bioinfo Genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-and-transcripts-ass…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Analysis of RNAseq data", "Gene expression differential analysis", "Galaxy", "Transcript and transcript variant analysis", "Transcriptomics (RNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 75, "name": "Galaxy: metagenomic: sequence analysis of amplicons from MiSeq and 454 sequencing with FROGS with Galaxy first step and statistics", "shortName": "", "description": "This training session, organized by Bioinfo Genotoul, Sigenae, NED (GenPhySE) and TWB, is designed to help you to deal with NGS data of 16S, 18S ... 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