Handles creating, reading and updating training events.

GET /api/training/?format=api&offset=60&ordering=-trainingMaterials
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 370,
    "next": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=80&ordering=-trainingMaterials",
    "previous": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=40&ordering=-trainingMaterials",
    "results": [
        {
            "id": 252,
            "name": "Introduction to High-performance computing",
            "shortName": "",
            "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr​\n\n",
            "homepage": "https://southgreenplatform.github.io/trainings//HPC/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [
                {
                    "id": 24,
                    "name": "South Green",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
                }
            ],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/384/?format=api"
            ]
        },
        {
            "id": 39,
            "name": "Introduction to bioinformatics for 1st year Master in integrative Plant Biology, Strasbourg University",
            "shortName": "",
            "description": "2H / year of hands-on introduction to bioinformatics for 1st year Master in integrative Plant Biology, Strasbourg University\n",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [
                "Master (M1 uniquement)"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 131,
            "name": "Galaxy : RNAseq de novo/avec référence & cleaning",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "NGS Data Analysis",
                "Analysis of RNAseq data",
                "Galaxy"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 178,
            "name": "Développement d'outils galaxy pour l'imagerie",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/303/?format=api"
            ]
        },
        {
            "id": 255,
            "name": "Initiation to NGS Workflow Managers developed within the South Green Platform: Galaxy and TOGGLe",
            "shortName": "",
            "description": "This course introduces the 2 commonly used workflow managers in the South Green Bioformatics platform, both in a theoretical and practical way, with hands-on practice sessions. It will help you to quickly develop and run your own pipelines using these tools through an graphical user or command-line interface.\n \nPrerequisites\nPrior knowledge of workflow managers not necessary Basic knowledge of Linux (Linux for dummies required) - TOGGLe practical\n\nProgram\nWhy using a workflow manager to analyse data ?\nHow to perform an analysis ?\nHow to create your own workflow ?\nHow to execute it?\nUse case\n\n\nLearning objectives\nExplaining what Workflow Managers are,\n\tin which way they differ from each other.\nHow you can use them in your research.\nCreating your own workflow\nAnalysing your NGS data with Galaxy and TOGGLe\n\n\nInstructors\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\nSebastien Ravel (SR) - sebastien.ravel@cirad.fr\nChristine Tranchant (CT) - christine.tranchant@ird.fr\n\n",
            "homepage": "https://southgreenplatform.github.io/trainings//galaxyToggle/",
            "is_draft": false,
            "costs": [
                "Free"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [
                {
                    "id": 24,
                    "name": "South Green",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api"
                }
            ],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/387/?format=api"
            ]
        },
        {
            "id": 241,
            "name": "Analyse avancée de séquences sur mesure",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/373/?format=api"
            ]
        },
        {
            "id": 357,
            "name": "Manipulation de données avec R, introduction à tidyverse",
            "shortName": "Introduction à tidyverse",
            "description": "Objectifs pédagogiques\r\nA l’issue de la formation, les stagiaires seront capables de :\r\n* utiliser les principales fonctions des packages dplyr et tidyr de l’écosystème du « tidyverse »\r\n* lire les données et les ranger dans un format « tidy »\r\n* manipuler les données : filtrer, sélectionner, trier, produire des résultats par groupe, fusionner plusieurs tables\r\n* mettre en forme et pivoter les tables de données\r\n\r\nProgramme\r\n* Principes du tidyverse\r\n* Principales fonctions de manipulation de données du package dplyr : ajouter de nouvelles variables, sélectionner des colonnes, filtrer des lignes, trier, grouper, fusionner des tables\r\n* Enchaînements des opérations à l’aide de « pipe »\r\n* Mise en forme, jointure et pivot de données avec le package tidyr\r\n* Mise en application sur un exemple d’analyse de données de transcriptomique.",
            "homepage": "https://documents.migale.inrae.fr/trainings.html",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [
                "R Language",
                "Tidyverse"
            ],
            "prerequisites": [
                "Basic knowledge of R"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api"
            ],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 82,
                    "name": "INRAE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api"
                },
                {
                    "id": 88,
                    "name": "BioinfOmics",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 10,
                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                }
            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2024-01-18T13:15:41.633863Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "Intermediate",
            "trainingMaterials": [],
            "learningOutcomes": "A l’issue de la formation, les stagiaires seront capables de :\r\n\r\nutiliser les principales fonctions des packages dplyr et tidyr de l’écosystème du « tidyverse »\r\nlire les données et les ranger dans un format « tidy »\r\nmanipuler les données : filtrer, sélectionner, trier, produire des résultats par groupe, fusionner plusieurs tables\r\nmettre en forme et pivoter les tables de données",
            "hoursPresentations": 2,
            "hoursHandsOn": 10,
            "hoursTotal": 12,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/700/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/579/?format=api"
            ]
        },
        {
            "id": 17,
            "name": "Formation universitaire",
            "shortName": "",
            "description": "LABGeM's researchers are involved in different training programs in collaboration with :\nthe University of Paris Saclay: master GENIOMHE, master MSSB, master NRBCe\nthe University Denis Diderot: master M2BI\nthe University Paris Descartes: master IMVI\nthe Institut Pasteur: Training ‘Analyse des génomes’\n",
            "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/university-trainings/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [
                "Master"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 142,
            "name": "Intégration d'outils dans Galaxy",
            "shortName": "",
            "description": "Galaxy (https://galaxyproject.org/) est une plateforme permettant d’intégrer et d’exécuter via une interface graphique des outils bioinformatiques, normalement utilisables en ligne de commande. Galaxy permet ainsi de faciliter l’utilisation de ces outils par tous, dans un environnement contrôlé,mais aussi de favoriser la reproductibilité des analyses (workflows, …).\nActuellement, > 3 750 outils (disponibles sur https://toolshed.g2.bx.psu.edu/) peuvent être intégrés à Galaxy. Mais tous les outils bioinformatiques dont vous pouvez avoir besoin ne sont pas intégrés dans \nl’environnement Galaxy. Et vous devez ainsi parfois renoncer à utiliser Galaxy et ses avantages pour traiter vos données.\n\nUn workshop est organisé à Clermont-Ferrand le Mercredi 25 Mai 2016. \nN’hésitez pas à faire circuler cette information aux personnes potentiellement intéressées.\nMerci par avance.\nBérénice BATUT\n\n",
            "homepage": "https://brnice.typeform.com/to/vCq4AV",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Galaxy"
            ],
            "prerequisites": [
                "Autre (Diplôme universitaire, école d'ingénieur ...)"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/271/?format=api"
            ]
        },
        {
            "id": 66,
            "name": "sRNASeq",
            "shortName": "",
            "description": "This training session is designed to help you to deal with small RNA sequences produced from the SGS (Second Generation Sequencing) technology particularly Illumina platforms (HiSeq). You will discover sequence file formats, learn about expression profiles of miRNA and other small non coding RNA and run different kind of analysis such as reads cleaning, alignment on a reference genome, detection and annotation of new and known miRNA, and expression quantification. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n",
            "homepage": "http://bioinfo.genotoul.fr/index.php/events/srnaseq/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "NGS Data Analysis",
                "Small and long non-coding RNAs",
                "Analysis of RNAseq data"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 89,
            "name": "Licence en siences de la vie, Aix-Marseille (AMU)",
            "shortName": "",
            "description": "Licence 2 bioinformatique appliquée (Van Helden J)\n",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [
                "Licence"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 160,
            "name": "Cluster",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/283/?format=api"
            ]
        },
        {
            "id": 284,
            "name": "Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy",
            "shortName": "Analyse de données NGS sous Galaxy",
            "description": "Objectifs pédagogiques\r\nConnaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de séquenceurs nouvelle génération (NGS). Savoir effectuer un alignement sur un génome de référence, un assemblage de novo d’un génome bactérien\r\n\r\nProgramme\r\nThéorie\r\n* Présentation des différents types de technologies de séquençage (lectures longues et courtes)\r\n\r\nPratique : Analyse des données de séquençage d’un génome bactérien\r\n* Contrôle qualité\r\n* Assemblage de-novo\r\n* Nettoyage des données\r\n* Assemblage\r\n* Visualisation et statistiques sur l’assemblage\r\n* Alignement de lectures sur un génome de référence et visualisation\r\nTous les TPs seront réalisés sous l’environnement d’exécution de traitements Galaxy.",
            "homepage": "https://documents.migale.inrae.fr/trainings.html",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0092",
                "http://edamontology.org/topic_0102",
                "http://edamontology.org/topic_0196",
                "http://edamontology.org/topic_3168"
            ],
            "keywords": [
                "Galaxy",
                "NGS"
            ],
            "prerequisites": [
                "Galaxy - Basic usage"
            ],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 10,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/769/?format=api"
            ],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [
                {
                    "id": 82,
                    "name": "INRAE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api"
                },
                {
                    "id": 88,
                    "name": "BioinfOmics",
                    "url": "https://catalogue.france-bioinformatique.fr/api/organisation/BioinfOmics/?format=api"
                }
            ],
            "organisedByTeams": [
                {
                    "id": 10,
                    "name": "MIGALE",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/MIGALE/?format=api"
                }
            ],
            "logo_url": "https://migale.inrae.fr/sites/default/files/migale-orange_0.png",
            "updated_at": "2024-01-18T13:51:11.796060Z",
            "audienceTypes": [
                "Professional (continued)"
            ],
            "audienceRoles": [
                "All"
            ],
            "difficultyLevel": "Novice",
            "trainingMaterials": [],
            "learningOutcomes": "Connaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de séquenceurs nouvelle génération (NGS). Savoir effectuer un alignement sur un génome de référence, un assemblage de novo d’un génome bactérien",
            "hoursPresentations": 3,
            "hoursHandsOn": 3,
            "hoursTotal": 6,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/582/?format=api"
            ]
        },
        {
            "id": 33,
            "name": "Analyse statistique RNA-seq sous Galaxy",
            "shortName": "",
            "description": "\nObjectifs\n\nSe sensibiliser aux concepts et méthodes statistiques pour l'analyse de données transcriptomiques de type RNA-Seq.\nComprendre le matériel et méthodes (normalisation et tests statistiques) d'un article\ndu domaine.\nComprendre les particularités liées à la nature des données.\n\n \n \nProgramme\n\nPlanification expérimentale des expériences RNA-Seq (identification des biais, répétitions, biais contrôlables).\nNormalisation et analyse différentielle : recherche de \"régions d'intérêt\" différentiellement exprimées (modèle linéaire généralisé).\nPrise en compte de la multiplicité des tests.\nLe cours sera illustré par différents exemples et un jeu de données sera traité à l'aide du package R SARTools (basé sur les packages R DESeq2 et edgeR) dans les environnements Galaxy et RStudio.\n",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "NGS Data Analysis",
                "Analysis of RNAseq data",
                "Galaxy"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/255/?format=api"
            ]
        },
        {
            "id": 57,
            "name": "M2 « Technologies à Haut Débit en Cancérologie »",
            "shortName": "",
            "description": " DU master de Cancérologie (Responsable Dr Claire Bardel)\n",
            "homepage": "http://www.france-bioinformatique.fr",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [],
            "prerequisites": [
                "Master (M2 uniquement)"
            ],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 109,
            "name": "Analyse de données métagénomiques 16S",
            "shortName": "",
            "description": "\n\n\n\n\n\n\n\nObjectifs\nCette formation est dédiée à l'analyse de données de type \"métagénomique amplicon\" issues des technolo-gies de séquençage 454 et Illumina. La formation couvre les grandes étapes d'un pipeline d'analyse bioinformatique sous Galaxy (FROGS) pour transformer les séquences en tables d'abondances puis présente des outils statistiques sous R (phyloseq) qui permettent de décrire et comparer les échantillons à partir de ces tables.\n\n \nProgramme\n\nJours 1 et 2 : Analyses Bioinformatiques sous Galaxy\nIntroduction générale\nBrefs rappels sur l'environnement Galaxy\nPrésentation des données issues des différentes technologies de séquençage\nPrétraitement des données\nClustering des séquences, construction des OTUs\nDétection de chimères\nAnnotation taxonomique\nFiltrage des données de comptages\nOutils de visualisation\nConstruction de workflow et configuration de FROGS\nLimite des données et des méthodes \nJour 3 et 4 :  Analyses Statistiques sous Rstudio\nIntroduction générale\nImport, manipulation et visualisation des données\nMesure de diversités : Unifrac, Bray-Curtis, etc.\nOrdination et réduction de dimension : MDS\nClustering et Heatmap\nComparaison d'échantillons : PERMANOVA, adonis\n▫ Introduction générale\n▫ Brefs rappels sur l'environnement Galaxy\n▫ Présentation des données issues des différentes technologies de séquençage ▫ Prétraitement des données\n▫ Clustering des séquences, construction des OTUs\n▫ Détection de chimères\n▫ Annotation taxonomique\n▫ Filtrage des données de comptages\n▫ Outils de visualisation\n▫ Construction de workflow et configuration de FROGS\n▫ Limite des données et des méthodes\n\n\n\n\n\nJour 3 : Analyses Statistiques sous Rstudio\n\n\t▫  Introduction générale\n\t\n\n\t▫  Import et manipulation des données\n\t\n\n\t▫  Mesure de diversités : Unifrac, Bray-Curtis, etc.\n\t\n\n\t▫  Ordination et réduction de dimension : MDS\n\t\n\n\t▫  Clustering et Heatmap\n\t\n\n\t▫  Comparaison d'échantillons : PERMANOVA, adonis \n\t\n\n\n\n\n\n\n\n\n",
            "homepage": "http://migale.jouy.inra.fr/",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "NGS Data Analysis",
                "Metagenomics",
                "Galaxy"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/265/?format=api"
            ]
        },
        {
            "id": 239,
            "name": "Analyse avancée de séquences",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/371/?format=api"
            ]
        },
        {
            "id": 288,
            "name": "Introduction to Linux",
            "shortName": "BirdLinux",
            "description": "Objectives\r\n- Understand the principles and advantages of the Linux system\r\n- Know and use the main bash commands. Ability to chain multiple commands using pipes\r\n- Launch programs with arguments\r\n- Gain independence to perform command line analyses\r\n\r\nPedagogical Content\r\n- Introduction to the Linux system.\r\n- File system: directory structure, paths, home directory, file and directory management.\r\n- Principle of protections: reading file attributes, access rights, management of user groups.\r\n- Shell usage: command reminders, input/output redirection, history, completion, launching programs with arguments.\r\n- Commands relevant to bioinformatics: grep, cut, sed, sort, more, etc.\r\n- Connection (ssh) - how to start a session from Linux or Windows PowerShell",
            "homepage": "https://pf-bird.univ-nantes.fr/training/",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [
                "http://edamontology.org/topic_0605"
            ],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Everyone",
            "accessConditions": "",
            "maxParticipants": 12,
            "contacts": [
                "https://catalogue.france-bioinformatique.fr/api/userprofile/596/?format=api"
            ],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [
                {
                    "id": 16,
                    "name": "BiRD",
                    "url": "https://catalogue.france-bioinformatique.fr/api/team/BiRD/?format=api"
                }
            ],
            "logo_url": "https://pf-bird.univ-nantes.fr/medias/photo/small_1612545616928-png",
            "updated_at": "2024-02-08T15:29:55.120700Z",
            "audienceTypes": [
                "Professional (continued)"
            ],
            "audienceRoles": [
                "Biologists",
                "All"
            ],
            "difficultyLevel": "Novice",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": 1,
            "hoursHandsOn": 6,
            "hoursTotal": 7,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/601/?format=api",
                "https://catalogue.france-bioinformatique.fr/api/event/639/?format=api"
            ]
        },
        {
            "id": 31,
            "name": "Fouille de texte",
            "shortName": "",
            "description": "http://migale.jouy.inra.fr/?q=fr/formations\n",
            "homepage": "",
            "is_draft": false,
            "costs": [],
            "topics": [],
            "keywords": [
                "Autre"
            ],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "http://migale.jouy.inra.fr/?q=fr/formations\n",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": []
        },
        {
            "id": 163,
            "name": "Read alignment and small size variants calling",
            "shortName": "",
            "description": "",
            "homepage": "",
            "is_draft": false,
            "costs": [
                "Priced"
            ],
            "topics": [],
            "keywords": [],
            "prerequisites": [],
            "openTo": "Internal personnel",
            "accessConditions": "",
            "maxParticipants": null,
            "contacts": [],
            "elixirPlatforms": [],
            "communities": [],
            "sponsoredBy": [],
            "organisedByOrganisations": [],
            "organisedByTeams": [],
            "logo_url": "",
            "updated_at": "2022-06-02T11:50:50.812642Z",
            "audienceTypes": [],
            "audienceRoles": [],
            "difficultyLevel": "",
            "trainingMaterials": [],
            "learningOutcomes": "",
            "hoursPresentations": null,
            "hoursHandsOn": null,
            "hoursTotal": null,
            "personalised": null,
            "event_set": [
                "https://catalogue.france-bioinformatique.fr/api/event/286/?format=api"
            ]
        }
    ]
}