Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=60&ordering=-hoursPresentations
{ "count": 370, "next": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=80&ordering=-hoursPresentations", "previous": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=40&ordering=-hoursPresentations", "results": [ { "id": 324, "name": "Python scripts for bioinformatics and Linux", "shortName": "Scripts en Python pour la bioinformatique et environnement Linux", "description": "OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils", "homepage": "", "is_draft": false, "costs": [ "1200 €" ], "topics": [], "keywords": [ "Linux", "Python Language" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/sites/default/files/ATGClogox120_0.png", "updated_at": "2025-01-23T13:50:29.570608Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/512/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/703/?format=api" ] }, { "id": 342, "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module 5/6 : Analyses RNA-seq, bioinformatique- version 2020", "shortName": "", "description": "Bilille propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé de 6 modules, à la carte : \r\n- Module 1: Analyses ADN\r\n- Module 2: Analyses de variants\r\n- Module 3 : Métagénomique\r\n- Module 4: ChIP-seq\r\n- Module 5: Analyses RNA-seq, bioinformatique\r\n- Module 6: Analyses RNA-seq, biostatistique\r\nLes fiches descriptives sont accessibles sur le site de Bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\nLes objectifs du module 5 sont :\r\n- Savoir réaliser une analyse transcriptomique par RNA-seq avec ou sans (de novo) génome de référence à l’aide du portail Galaxy\r\n- Avoir un regard critique sur la qualité des lectures obtenues par le séquenceur\r\n- Connaître et savoir paramétrer les outils nécessaires à l’analyse", "homepage": "https://bilille.univ-lille.fr/training/training-offer", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "Etre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation bilille « Initiation à Galaxy »)\r\nAvoir suivi le module 1/5 « Analyses ADN » de ce cycle ou toute autre formation permettant de justifier de connaissances sur les données de séquençage haut débit et leur alignement.", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 66, "name": "UDL", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/UDL/?format=api" } ], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2024-12-09T17:40:00.824571Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/549/?format=api" ] }, { "id": 145, "name": "IBI - 2", "shortName": "", "description": "", "homepage": "http://www.france-bioinformatique.fr/en/evenements/IFB-IBI", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/cloudIFB_3.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/274/?format=api" ] }, { "id": 160, "name": "Cluster", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/283/?format=api" ] }, { "id": 332, "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING", "shortName": "", "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. Variant annotation (SNPeff / SNPsift).\r\n \r\nThe session will take place in the room ‘salle de formation’ at INRAE center of Toulouse-Auzeville.\r\n\r\nPrerequisites: ability to use a Unix environment (see Unix training) and Cluster (see Cluster training).\r\n \r\nTool box: FastQC, BWA, Samtools, Picard tools, GATK, SnpSift / SnpEff, IGV.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-calling/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_0102", "http://edamontology.org/topic_2885" ], "keywords": [], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT 0875", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%200875/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/sigenae-text-black-1.png", "updated_at": "2024-06-05T09:26:00.406715Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/609/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/634/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/530/?format=api" ] }, { "id": 18, "name": "Linux", "shortName": "", "description": "Formation Linux\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "Linux", "Développements technologiques de l‘Information et de la Communication" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 66, "name": "sRNASeq", "shortName": "", "description": "This training session is designed to help you to deal with small RNA sequences produced from the SGS (Second Generation Sequencing) technology particularly Illumina platforms (HiSeq). You will discover sequence file formats, learn about expression profiles of miRNA and other small non coding RNA and run different kind of analysis such as reads cleaning, alignment on a reference genome, detection and annotation of new and known miRNA, and expression quantification. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/srnaseq/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Small and long non-coding RNAs", "Analysis of RNAseq data" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 20, "name": "Traitement des données NGS sous Galaxy", "shortName": "", "description": "http://migale.jouy.inra.fr/?q=fr/formations\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "http://migale.jouy.inra.fr/?q=fr/formations\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/533/?format=api" ] }, { "id": 198, "name": "Formation librairie GATB", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/325/?format=api" ] }, { "id": 320, "name": "Ecole Thématique de Bioinformatique Intégrative / Integrative Bioinformatics Training School", "shortName": "ETBII", "description": "Dans l’objectif de développer et fédérer des compétences en bioinformatique intégrative au sein de la communauté, l’IFB propose une nouvelle école thématique ayant un double objectif :\r\n- une montée en compétences théoriques et pratiques des bioinformaticiens,\r\n- la constitution de matériel pédagogique partagé sur ce sujet.\r\n\r\nCette école rassemble une équipe pédagogique de 10 personnes et pourra accueillir 30 participants pour sa première édition.\r\nL’ensemble de la formation reposera sur l’utilisation des ressources de calcul et de la plateforme pédagogique de l’Institut Français de Bioinformatique.\r\n\r\nObjectifs pédagogiques \r\n\r\nLa formation a pour but :\r\n- d’introduire les concepts de bases et les différents types d’approches utilisées en bioinformatique intégrative,\r\n- de proposer un approfondissement et une mise en pratique d’une de ces approches sur un/des jeux de données intégrant différents types de données omiques. Cette mise en oeuvre permettra de balayer l’ensemble des points d’attention d’une analyse intégrative, de la préparation des données jusqu’à l’interprétation des résultats,\r\n- de créer, améliorer et partager les ressources pédagogiques (supports de formation, jeux de données, tutoriels) sur le thème de la bioinformatique intégrative.\r\n\r\nA la fin de cette formation les participants :\r\n- auront acquis un socle de connaissances générales en bioinformatique intégrative, \r\n- auront mis en oeuvre une analyse intégrative depuis la préparation des données jusqu’à l’analyse critique de résultats sur un/des jeux de données proposés lors de la formation,\r\n- auront contribué à constituer du matériel pédagogique partagé sur le sujet.\r\n\r\nPré-requis\r\n- Connaissances de base en Unix/shell, R et/ou Python \r\n- Autonomie dans la gestion de son poste de travail (installation de librairies et maîtrise des environnements de packaging type conda)", "homepage": "https://www.france-bioinformatique.fr/formation/etbii/", "is_draft": false, "costs": [ "770 TTC pour les académiques et 1540 TTC pour les privés" ], "topics": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3391", "http://edamontology.org/topic_3366" ], "keywords": [ "Methodology", "Biostatistics", "Biological network inference and analysis", "Dimension reduction", "Semantic web", "Integration of heterogeneous data", "Data Integration", "Tool integration" ], "prerequisites": [ "Linux and knowledge of NGS formats", "Basic knowledge of R" ], "openTo": "Everyone", "accessConditions": "Cette formation est ouverte à toute la communauté mais cette première édition s’adresse en priorité à des bioinformaticien·ne·s des plateformes membres et équipes associées IFB souhaitant contribuer à la constitution de matériel pédagogique pour se préparer au montage de futures formations sur ce thème.", "maxParticipants": 30, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/762/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 1, "name": "CNRS - IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/CNRS%20-%20IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 4, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://drive.google.com/file/d/1a_fuOgqOU812GRJLApGMofJ87WTlxDI0/view?usp=sharing", "updated_at": "2024-12-03T15:46:48.157120Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Life scientists", "Computer scientists", "Bioinformaticians" ], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "A la fin de cette formation les participants :\r\n- auront acquis un socle de connaissances générales en bioinformatique intégrative, \r\n- auront mis en oeuvre une analyse intégrative depuis la préparation des données jusqu’à l’analyse critique de résultats sur un/des jeux de données proposés lors de la formation,\r\n- auront contribué à constituer du matériel pédagogique partagé sur le sujet.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/489/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/505/?format=api" ] }, { "id": 21, "name": "Annotation de génomes microbiens", "shortName": "", "description": "Modules en prépartion....\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Metagenomics", "Genome analysis", "Structural and functional annotation of genomes", "Genomics (DNA-seq)" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/247/?format=api" ] }, { "id": 309, "name": "EBAII A&A - Ecole EBAII Assemblage & Annotation / Assembly & Annotation EBAII school", "shortName": "EBAII Assemblage & Annotation / Assembly & Annotation EBAii school", "description": "Objectifs\r\nLa formation s’adresse à des biologistes directement impliqués dans des projets “Next Generation Sequencing” (NGS), pour l'assemblage et l'annotation de novo de génomes. Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour des différentes étapes qui mèneront à l’obtention d’un génome annoté à partir de données “long reads” et “hybride” : contrôle qualité des données, assemblage, scaffolding, polishing, annotation structurale et fonctionnelle (en session parallèle pour les procaryotes et les eucaryotes). \r\nL’école vise à introduire les concepts, à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur équipe.\r\nAttention : le tutorat n'a pas pour vocation de réaliser l’analyse complète des données des participants.\r\nPublic visé\r\nCette formation est destinée aux biologistes (ingénieurs, doctorants, chercheurs, enseignants-chercheurs, praticiens…) confrontés à l’analyse de données NGS, et qui ne disposent pas des compétences bioinformatiques suffisantes.", "homepage": "https://www.france-bioinformatique.fr/formation/ebaii2022_genomique/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 40, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://cvt.aviesan.fr/wp-content/themes/cvtaviesan/images/logo_cvt.png", "updated_at": "2024-12-05T09:11:55.721141Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "Initiation au traitement des données de génomique obtenues par séquençage à haut débit\r\nAssemblage et annotation de novo de génomes\r\nL’école vise à introduire les concepts, à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur équipe.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/463/?format=api" ] }, { "id": 210, "name": "Python avance", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/339/?format=api" ] }, { "id": 212, "name": "NGS sous Galaxy", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/341/?format=api" ] }, { "id": 213, "name": "Analyse bioinformatique de données RNA-Seq sous Galaxy", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/342/?format=api" ] }, { "id": 279, "name": "Annotation and analysis of prokaryotic genomes using the MicroScope platform", "shortName": "MicroScope training", "description": "In an effort to inform members of the research community about our annotation methods, to provide training for collaborators and other scientists who use the MicroScope platfom, and to inform scientific public on the analysis available in PkGDB (Prokaryotic Genome DataBase), we have developed a 4.5-day course in Microbial Genome Annotation and Comparative Analysis using the MaGe graphical interfaces.\r\n\r\nThis course will familiarize attendees with LABGeM’s annotation pipeline and the manual annotation software MaGe (Magnifying Genome) . No specific bioinformatics skill is required: detailed instruction on the algorithm developed in each annotation methods can be found in specific training courses on «Genomic sequences analysis». Here we focus on the general idea behind each method and, above all, the way you can interpret the corresponding results and combine them with other evidences in order to change or correct the current automatic functional annotation of a given gene, if necessary.\r\n\r\nThis course will also describe how to perform effective searches and analysis of procaryotic data using the graphical functionalities of the MaGe’s interfaces. Because of the numerous pre-computation available in our system (results of “common” annotation tools, synteny with all complete bacterial genomes, metabolic pathway reconstruction, fusion/fission events, genomic islands, …), many practical exercises allow attendees to get familiar with the use the MaGe graphical interfaces in order to efficiently explore these sets of results.", "homepage": "https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/training-annotation-analysis-of-prokaryotic-genomes-using-the-microscope-platform/", "is_draft": false, "costs": [ "Priced" ], "topics": [ "http://edamontology.org/topic_0797", "http://edamontology.org/topic_0085", "http://edamontology.org/topic_3301" ], "keywords": [], "prerequisites": [ "Licence" ], "openTo": "Everyone", "accessConditions": "External training sessions can also be scheduled on demand, in France or abroad. See : https://labgem.genoscope.cns.fr/professional-trainings/microscope-professional-trainings/external-microscope-professional-training-sessions/", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 15, "name": "Laboratory of Bioinformatics Analyses for Genomics and Metabolism", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/Laboratory%20of%20Bioinformatics%20Analyses%20for%20Genomics%20and%20Metabolism/?format=api" } ], "organisedByOrganisations": [ { "id": 67, "name": "University of Paris-Saclay", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20Paris-Saclay/?format=api" } ], "organisedByTeams": [ { "id": 9, "name": "MicroScope", "url": "https://catalogue.france-bioinformatique.fr/api/team/MicroScope/?format=api" } ], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/plateforme-logo/MicroScope_logo.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [ "Undergraduate", "Graduate", "Professional (continued)" ], "audienceRoles": [ "Researchers", "Life scientists", "Biologists", "Curators" ], "difficultyLevel": "Intermediate", "trainingMaterials": [], "learningOutcomes": "Annotation and comparative analysis of bacterial genomes:\r\n\r\n- acquire theoretical and practical knowledge of genome annotation tools (structural and functional annotation, metabolic networks annotation)\r\n- interpret the results of functional annotation tools\r\nperform various comparative analyses : conserved synteny analyses, pan-genome, phylogenetic and metabolic profiles.\r\n- analyse the results of metabolic networks prediction tools and look for candidate genes for enzyme activities.\r\n- use the tools to analyse the genome(s) of interest of participants", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": 31, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/439/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/506/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/436/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/507/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/577/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/576/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/659/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/658/?format=api" ] }, { "id": 317, "name": "H2020-AGENT Datathon on experimental phenotypic data management using the FAIRDOM platform", "shortName": "H2020-AGENT Datathon", "description": "INRAE will host a datathon on experimental phenotypic data management using the FAIRDOM platform, and submission workflow using curation & validation tools.\r\nThis datathon is intended for H2020-AGENT project members only. Attendees will bring their own experimental phenotypic data", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [ "none" ], "openTo": "Internal personnel", "accessConditions": "This datathon is intended for H2020-AGENT project members only", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/755/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "PlantBioinfoPF", "url": "https://catalogue.france-bioinformatique.fr/api/team/PlantBioinfoPF/?format=api" } ], "logo_url": "https://urgi.versailles.inrae.fr/var/storage/images/home-urgi/platform/6883-40-eng-GB/Platform_medium.jpg", "updated_at": "2025-01-17T15:14:15.554507Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [] }, { "id": 251, "name": "Survival Guide for Perl applied to Bioinformatics", "shortName": "", "description": " \n\n\t\t\tThis course provides an introduction to programming using Perl and at the end of the training, participants could write simple Perl programs to handle biological data and to undertstand more complex Perl programs written by others.\n\t\t\t\nPrerequisites\nBasic knowledge of Linux (Linux for dummies required)\n\nProgram\nPerl data structures (scalar,arrays, hashes)\nStructure control ( loops)\nBasic functions, and operators.\nWriting and running your own program\nPassing options and files to his own script.\nRegular expressions\n\n\nLearning objectives\nWriting simple Perl programs to analyze data files\nUnderstanding Perl programs written by others\nUsing Perl basic syntax and modules in their own script\nRun programs from their script, parsing and extracting data from data files\n\n\nInstructors\n\n\nChristine Tranchant - christine.tranchant@ird.fr\nFrançois Sabot - francois.sabot@ird.fr\nNdomassi tando - ndomassi.tando@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//perl/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 13, "name": "Formation permanente IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=api" } ], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/383/?format=api" ] }, { "id": 27, "name": "Perl avancé", "shortName": "", "description": "\nObjectifs\n\nAller plus loin avec Perl afin d’être autonome pour des manipulations complexes visant à extraire et reformater des données issues de fichiers texte.\n\n \n \n \n \nProgramme\n\n- Expressions régulières\n- Fonctions\n- Prise en main de Bioperl\n \n \nIllustration avec des exercices de manipulation de fichiers de séquences et de fichiers de résultats d’outils bionformatiques.\n \n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "Perl Langage" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/250/?format=api" ] }, { "id": 89, "name": "Licence en siences de la vie, Aix-Marseille (AMU)", "shortName": "", "description": "Licence 2 bioinformatique appliquée (Van Helden J)\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [ "Licence" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] } ] }
