Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=340&ordering=-costs
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La réalisation de ces analyses nécessite également l’accès à des ressources de calcul telles que des clusters de calcul. \n\t\t\tLe DP IAVAO et le LMI LAPSE en collaboration avec la plateforme bioinformatique South Green organisent, du 4 au 12 Octobre 2018, une formation en bioinformatique dédié à l’analyse de données de séquençage dont les objectifs sont de présenter les technologies de séquençage et les différentes analyses bioinformatiques pour exploiter au mieux cette masse de données afin de pouvoir réaliser des projets génomiques à grande échelle sur leurs modèles (plantes et pathogènes).\nPrérequis\nAucun\n\nProgramme\nLinux et lignes de commandes \nInitiation à l’utilisation du cluster du CERAAS \nPrésentation des technologies de séquençages \nAppel de SNP sur des données WGS \nPost analyse de données de SNPs\nOutils Genome Harvest \n\n\nObjectifs\nAprès la formation, les participants seront capables de :\nse connecter à un cluster Linux\nlancer des programmes/analyses bioinformatiques\ndéfinir les étapes pour analyser des données de séquençage\nanalyser des données de séquençage\nutiliser des gestionnaires de workflow tel que Galaxy ou TOGGLe\n\n\nInstructors\nChristine Tranchant (CT) - christine.tranchant@ird.fr\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat (BP) - bertrand.pitollat@cirad.fr\nFrançois Sabot (SB) - francois.sabot@ird.fr\nManuel Ruiz (MR) - manuel.ruiz@cirad.fr\nGautier Sarah (GS) - gautier.sarah@cirad.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 14, "name": "IAVAO", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IAVAO/?format=api" } ], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/386/?format=api" ] }, { "id": 253, "name": "Installing and Managing a High-Performance Computing (HPC) Cluster ", "shortName": "", "description": "This course ran for 5 days covering all the concepts necessary to install and manage a high-performance computing (HPC) cluster. During this course, a HPC cluster were installed at CERAAS (Thiès, Sénégal) by the participants, IT managers from western africa (IRD, ISRA, CERAAS).\n", "homepage": "https://southgreenplatform.github.io/trainings//ngsTrainings/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 13, "name": "Formation permanente IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=api" }, { "id": 14, "name": "IAVAO", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IAVAO/?format=api" } ], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/385/?format=api" ] }, { "id": 252, "name": "Introduction to High-performance computing", "shortName": "", "description": "This course offers an introduction on how to work with HPC Southgreen clusters. It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/384/?format=api" ] }, { "id": 251, "name": "Survival Guide for Perl applied to Bioinformatics", "shortName": "", "description": " \n\n\t\t\tThis course provides an introduction to programming using Perl and at the end of the training, participants could write simple Perl programs to handle biological data and to undertstand more complex Perl programs written by others.\n\t\t\t\nPrerequisites\nBasic knowledge of Linux (Linux for dummies required)\n\nProgram\nPerl data structures (scalar,arrays, hashes)\nStructure control ( loops)\nBasic functions, and operators.\nWriting and running your own program\nPassing options and files to his own script.\nRegular expressions\n\n\nLearning objectives\nWriting simple Perl programs to analyze data files\nUnderstanding Perl programs written by others\nUsing Perl basic syntax and modules in their own script\nRun programs from their script, parsing and extracting data from data files\n\n\nInstructors\n\n\nChristine Tranchant - christine.tranchant@ird.fr\nFrançois Sabot - francois.sabot@ird.fr\nNdomassi tando - ndomassi.tando@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//perl/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 12, "name": "LAPSE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/LAPSE/?format=api" }, { "id": 13, "name": "Formation permanente IRD", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Formation%20permanente%20IRD/?format=api" } ], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/383/?format=api" ] }, { "id": 250, "name": "Linux For Jedi", "shortName": "", "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. 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"https://catalogue.france-bioinformatique.fr/api/event/375/?format=api" ] }, { "id": 242, "name": "Introduction à la Phylogénie Moléculaire : Concepts, méthodes et interprétation", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/374/?format=api" ] }, { "id": 238, "name": "Rrr - Rapide IntRoduction à R (R pour la génomique)", "shortName": "", 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