Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=20&ordering=updated_at
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Accessible without any prerequisite in computer science, it will allow you to master the different fundamental tools of galaxy and will open the doors of bioinformatics analysis for your different projects.\r\nDifferent questions will be addressed through an example of variants analysis in a prokaryotic organism. At the end of this course, on any accessible galaxy instance, you will be able to:\r\n- upload your data\r\n- map them on a reference genome\r\n- find the variants (SNPs) and analyze the results\r\n- generate, manipulate and share your workflows, data and histories\r\n- find the right tools for other analyses and use them in your own project.\r\n\r\nUnless all participants speak French, the course will be taught in English.", "homepage": "https://pliniuscursus.univ-amu.fr/formation/galaxy-platform/", "is_draft": false, "costs": [ "Free to academics" ], "topics": [ "http://edamontology.org/topic_0091", "http://edamontology.org/topic_0622" ], "keywords": [], "prerequisites": [ "Master" ], "openTo": "Internal personnel", "accessConditions": "The first sessions are only available for IM2B students.", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 23, "name": "PACA-Bioinfo", 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You will discover sequence file formats, learn about expression profiles of miRNA and other small non coding RNA and run different kind of analysis such as reads cleaning, alignment on a reference genome, detection and annotation of new and known miRNA, and expression quantification. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/srnaseq/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Small and long non-coding RNAs", "Analysis of RNAseq data" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 74, "name": "Galaxy : sRNAseq", "shortName": "", "description": "As the command line training but with Galaxy. 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"", "description": "http://migale.jouy.inra.fr/?q=fr/formations\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "http://migale.jouy.inra.fr/?q=fr/formations\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/533/?format=api" ] }, { "id": 21, "name": "Annotation de génomes microbiens", "shortName": "", "description": "Modules en prépartion....\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, 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"topics": [], "keywords": [ "Autre" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 27, "name": "Perl avancé", "shortName": "", "description": "\nObjectifs\n\nAller plus loin avec Perl afin d’être autonome pour des manipulations complexes visant à extraire et reformater des données issues de fichiers texte.\n\n \n \n \n \nProgramme\n\n- Expressions régulières\n- Fonctions\n- Prise en main de Bioperl\n \n \nIllustration avec des exercices de manipulation de fichiers de séquences et de fichiers de résultats d’outils bionformatiques.\n \n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "Perl Langage" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/250/?format=api" ] }, { "id": 83, "name": "Projet AMIDEX \"spongex\"", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], 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"", "description": "Galaxy is a workbench available for biologists from Sigenae Platform. Galaxy objectives are:\n First, making bioinfo Linux tools accessible to biologists.\n Then, it is possible to add Linux tools by developpers into Galaxy workbench.\n Then, Galaxy is used to hide the complexity of the infrastructure and to allow creation, execution and sharing of workflows.\nYou will acquire the following competencies required for the other Galaxy trainning:\n Login to Galaxy: Galaxy Workbench (To access to Galaxy, you need to have an LDAP Genotoul login and password).\n Begin to use some tools provided (BWA, SAM tools, FastQC).\n Work on files.\nOrganized jointly by the Sigenae and the Bioinfo Genotoul platform.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/first-step-with-galaxy/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "Web portals", "Galaxy", "Interfaces", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] } ] }