Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=20&ordering=personalised
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It consists of modules with a large variety of exercises described hereunder (PROVISIONAL SCHEDULE):\r\n\r\nUsing a Jupyter notebook (Day 1).\r\nUsing variables (Day 1).\r\nBasic operations and functions (Day 1).\r\nReading a file, writing to a file (Day 1).\r\nCharacter string manipulation (Day 1).\r\nLists and dictionaries (Day 2).\r\nThe if and for controls (Day 2).\r\nBases of algorithms (Day 2).", "homepage": "https://bioinfo.genotoul.fr/index.php/events/python/", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_3307" ], "keywords": [ "Python Language" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-01T11:55:51.057828Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Life scientists" ], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 142, "name": "Introduction to python", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Introduction%20to%20python/?format=api" } ], "learningOutcomes": "", "hoursPresentations": 5, "hoursHandsOn": 9, "hoursTotal": 14, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/635/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/718/?format=api" ] }, { "id": 385, "name": "IMGT® Webinar series", "shortName": "IMGT® Webinar series", "description": "A serie of five webnaires to understand IMGT databases and tools\r\n\r\nWebinar 1: Comprehensive Guide to IMGT®, The International ImMunoGeneTics Information System®\r\nWebinar 2: IMGT research axis I: IMGT biocuration pipeline and IMGT annotated data in IMGT databases and tools\r\nWebinar 3: IMGT research axis II: Analysis and exploration of the expressed IG and TR repertoires with IMGT tools\r\nWebinar 4: IMGT research axis III: databases and tools for the analysis of the proteins, structures and engineered antibodies\r\nWebinar 5: IMGT-KG: a knowledge graph in immunogenetics", "homepage": "https://www.imgt.org/IMGTeducation/webinar.php", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_2814", "http://edamontology.org/topic_3930", "http://edamontology.org/topic_3948" ], "keywords": [ "Protein structures", "Immunogenetics", "Monoclonal antibody" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "free inscription", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/339/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 46, "name": "IMGT", "url": "https://catalogue.france-bioinformatique.fr/api/team/IMGT/?format=api" } ], "logo_url": null, "updated_at": "2024-12-04T10:46:29.357307Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": 1, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/654/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/656/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/657/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/672/?format=api" ] }, { "id": 294, "name": "Linux for Dummies", "shortName": "", "description": "This course offers an introduction to work with Linux. We will describe the Linux environment, the first linux commands so participants can start to utilize command-line tools and feel comfortable using bioinformatics softwares through a linux terminal", "homepage": "https://southgreenplatform.github.io/trainings//linux/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 15, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-12-04T15:05:31.847400Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 3, "hoursHandsOn": 4, "hoursTotal": 7, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/468/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/555/?format=api" ] }, { "id": 299, "name": "Initiation à Galaxy / Galaxy Initiation", "shortName": "Galaxy Initiation", "description": "Objectifs\r\n- Savoir exploiter l’environnement Galaxy pour être en mesure d’analyser ses données.\r\n- Être en mesure de créer ses workflows.\r\nProgramme\r\n- Téléchargement des données à traiter.\r\n- Manipulation de fichiers.\r\n- Traitement des données.\r\n- Visualisation des résultats.\r\n- Création de workflows.\r\n- Partage de résultats et de workflows.", "homepage": "https://abims.sb-roscoff.fr/module/galaxy_init", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 18, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2025-02-21T08:33:02.803009Z", "audienceTypes": [ "Graduate", "Professional (initial)", "Professional (continued)" ], "audienceRoles": [ "All" ], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 4, "hoursHandsOn": 3, "hoursTotal": 7, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/620/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/446/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/500/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/519/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/711/?format=api" ] }, { "id": 315, "name": "Using sed and awk to modify large large text files", "shortName": "", "description": "Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions. The course is based mainly on exercises with small sections presenting concepts and commands.", "homepage": "http://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/338/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-01T11:57:16.182121Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Biologists" ], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/478/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/479/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/611/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/631/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/669/?format=api" ] }, { "id": 312, "name": "Introduction to python", "shortName": "", "description": "This course provides an introduction to programming using python. At the end of the training, participants should be able to write simple python programs to handle biological data and to understand more complex programs written by others.\r\nNote : This course in currently available only in french", "homepage": "https://southgreenplatform.github.io/trainings//python/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 15, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 10, "hoursHandsOn": 18, "hoursTotal": null, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/470/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/556/?format=api" ] }, { "id": 377, "name": "RNASEQ ALIGNMENT, QUANTIFICATION AND TRANSCRIPT DISCOVERY WITH STATISTICS", "shortName": "RNASeq bioinfo / biostat", "description": "The Toulouse Genotoul bioinformatics platform, in collaboration with the Genotoul Biostatistics platform, and the MIAT unit, organize a 3,5 days long training course for bio-informaticians and biologists aiming at learning sequence analysis. It focuses on (protein coding) gene expression analysis using reads produced by ‘RNA-Seq’. This training session is designed to introduce sequences from ‘NGS’ (Next Generation Sequencing), particularly Illumina platforms (HiSeq). You will discover the standards file formats, learn about the usual biases of this type of data and run different kinds of analyses, such as spliced alignment on a reference genome, novel gene and transcript discovery, expression quantification of coding genes and transcripts. Finally you will be able to extract the differentially expressed genes.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/rnaseq-alignment-transcripts-assemblies-statistics/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3308", "http://edamontology.org/topic_0203" ], "keywords": [ "NGS Data Analysis", "Expression" ], "prerequisites": [ "Langage R de base", "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "Register on the training page : https://bioinfo.genotoul.fr/index.php/training-2/training/", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/642/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 33, "name": "Genotoul-biostat", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-biostat/?format=api" }, { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-01T11:55:30.468881Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Life scientists", "Biologists", "Bioinformaticians" ], "difficultyLevel": "Intermediate", "trainingMaterials": [ { "id": 135, "name": "training RNASEQ Bioinfo part", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/training%20RNASEQ%20Bioinfo%20part/?format=api" }, { "id": 136, "name": "training RNASeq biostat part", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/training%20RNASeq%20biostat%20part/?format=api" } ], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": 21, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/612/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/721/?format=api" ] }, { "id": 391, "name": "Soumission de données et métadonnées à EMBL-EBI", "shortName": "FAIR Data Geno", "description": "Processus et outils mis en place dans le cadre des projets AgroDiv et BReIF pour soumettre des données dans les archives EMBL-EBI associées à des descriptions riches des échantillons séquencés dans BioSamples.", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3366", "http://edamontology.org/topic_0219", "http://edamontology.org/topic_0780", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_0625" ], "keywords": [ "Données" ], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "Public", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/813/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/3/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 22, "name": "BReIF", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/BReIF/?format=api" } ], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 39, "name": "URGI - US1164", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "URGI", "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api" } ], "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png", "updated_at": "2025-09-12T13:00:03.352886Z", "audienceTypes": [ "Graduate", "Professional (initial)", "Professional (continued)" ], "audienceRoles": [ "All" ], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 147, "name": "Data-brokering script", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Data-brokering%20script/?format=api" } ], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": 2, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/678/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/738/?format=api" ] }, { "id": 283, "name": "Presentation of IMGT® standards, databases, tools and web resources", "shortName": "IMGT", "description": "Presentation of IMGT® patterns and resources for the study of genes, expressed repertoires and three-dimensional structures of immunoglobulins (antibodies) and T cell receptors.", "homepage": "https://www.imgt.org/", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_3930", "http://edamontology.org/topic_3948" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [] }, { "id": 317, "name": "Datathon AGENT - FAIRDOM", "shortName": "FAIRDOM", "description": "Datathon on experimental phenotypic data management using the FAIRDOM platform, and submission workflow using curation & validation tools.", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3572", "http://edamontology.org/topic_3365", "http://edamontology.org/topic_0780", "http://edamontology.org/topic_0091", "http://edamontology.org/topic_3571", "http://edamontology.org/topic_0625", "http://edamontology.org/topic_3366" ], "keywords": [ "Données" ], "prerequisites": [ "Attendees will bring their own data" ], "openTo": "Internal personnel", "accessConditions": "For H2020-AGENT project members only", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/504/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/8/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 21, "name": "H2020-AGENT", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/H2020-AGENT/?format=api" } ], "organisedByOrganisations": [ { "id": 82, "name": "INRAE", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INRAE/?format=api" }, { "id": 39, "name": "URGI - US1164", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/URGI%20-%20US1164/?format=api" } ], "organisedByTeams": [ { "id": 26, "name": "URGI", "url": "https://catalogue.france-bioinformatique.fr/api/team/URGI/?format=api" } ], "logo_url": "https://urgi.versailles.inra.fr/extension/inra/design/urgi/images/logoURGI_res72_2-82X1-98.png", "updated_at": "2025-09-13T13:27:42.544621Z", "audienceTypes": [ "Graduate", "Professional (initial)", "Professional (continued)" ], "audienceRoles": [ "All" ], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/737/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/735/?format=api" ] }, { "id": 306, "name": "Molecular Phylogeny - Level 1", "shortName": "Phylogénie moléculaire - Niveau 1", "description": "OBJECTIF\r\n- Savoir inférer un arbre phylogénétique et l'interpréter\r\n\r\nPRÉREQUIS\r\n- Savoir ce à quoi correspondent des séquences génétiques homologues\r\n- Avoir déjà utilisé les logiciels de base en bioinformatique\r\n- Connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres)\r\n- Avoir des notions de programmation\r\n\r\nPROGRAMME\r\n- Lignes de commandes Linux\r\n- Le format Newick\r\n- Dessin d'arbres\r\n- Alignements multiples et nettoyage\r\n- Modèles d'évolution\r\n- Choix de modèles\r\n- Définitions et propriétés des arbres\r\n- Méthodes de parcimonie\r\n- Méthodes de distance\r\n- Maximum de vraisemblance\r\n- Reconstruction phylogénétique Bayésienne\r\n- Bootstraps et autres supports de branches", "homepage": "", "is_draft": false, "costs": [ "1200 €" ], "topics": [ "http://edamontology.org/topic_0084", "http://edamontology.org/topic_3293", "http://edamontology.org/topic_3299" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/ATGClogox120_0.png", "updated_at": "2023-01-24T10:44:55.936489Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "To know how to infer a phylogenetic tree and interpret it.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/460/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/509/?format=api" ] }, { "id": 310, "name": "Diplôme Universitaire en Bioinformatique Intégrative / University Diploma in Integrative Bioinformatics", "shortName": "DUBii", "description": "La bioinformatique est devenue une compétence incontournable pour l'analyse de données de natures diverses : génomes, transcriptomes, protéomes, métabolomes, structures macromoléculaires, réseaux d'interactions. L'appropriation par les biologistes des méthodes et des outils de biostatistique et bioinformatique intégrative est un enjeu majeur pour la montée en compétence des équipes de recherche et des plateformes de service.\r\n\r\nL'université de Paris propose en partenariat avec l'Institut Français de Bioinformatique (IFB) la troisième édition du Diplôme Universitaire en Bioinformatique intégrative (DUBii). Cette formation s’adresse en priorité à des biologistes ou à des médecins souhaitant évoluer en compétences ou envisager une reconversion professionnelle et ayant déjà acquis des compétences (formation courte, autoapprentissage, expérience de terrain) en informatique ou bioinformatique / biostatistique (environnement Unix, Python ou R ou autre langage de programmation). \r\n\r\nLe DUBii fournira une formation théorique et pratique, complétée par une période d'immersion de 20 jours sur l'une des plateformes régionales de l'IFB, qui mobilisera, dans le cadre d'un projet tutoré, l'ensemble des méthodes et outils appris durant les cours pour réaliser un projet personnel de bioinformatique intégrative. 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Cette édition de l’école aborde les nouveaux enjeux technologiques: elle s’articulera autour des différentes étapes qui mèneront à l’obtention d’un génome annoté à partir de données “long reads” et “hybride” : contrôle qualité des données, assemblage, scaffolding, polishing, annotation structurale et fonctionnelle (en session parallèle pour les procaryotes et les eucaryotes). \r\nL’école vise à introduire les concepts, à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur équipe.\r\nAttention : le tutorat n'a pas pour vocation de réaliser l’analyse complète des données des participants.\r\nPublic visé\r\nCette formation est destinée aux biologistes (ingénieurs, doctorants, chercheurs, enseignants-chercheurs, praticiens…) confrontés à l’analyse de données NGS, et qui ne disposent pas des compétences bioinformatiques suffisantes.", "homepage": "https://www.france-bioinformatique.fr/formation/ebaii2022_genomique/", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 40, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "https://cvt.aviesan.fr/wp-content/themes/cvtaviesan/images/logo_cvt.png", "updated_at": "2024-12-05T09:11:55.721141Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "Initiation au traitement des données de génomique obtenues par séquençage à haut débit\r\nAssemblage et annotation de novo de génomes\r\nL’école vise à introduire les concepts, à manipuler les outils informatiques et à en interpréter les résultats. Elle est basée sur une alternance de courtes sessions théoriques et d’ateliers pratiques. Les participants bénéficieront d’un tutorat personnalisé pour élaborer leur plan d’analyse, et effectuer les premières étapes de traitement de leurs propres données ou de celles de leur équipe.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/463/?format=api" ] }, { "id": 316, "name": "IMGT® standards, databases, tools and web resources", "shortName": "IMGT workshop", "description": "Presentation of IMGT® patterns and resources for the study of genes, expressed repertoires and three-dimensional structures of immunoglobulins (antibodies) and T cell receptors.", "homepage": "https://www.imgt.org/", "is_draft": false, "costs": [], "topics": [ "http://edamontology.org/topic_3930", "http://edamontology.org/topic_3948" ], "keywords": [ "Protein structures", "Immune repertoire analysis", "Monoclonal antibody", "Immunology" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/339/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [ "Researchers", "Biologists", "Bioinformaticians" ], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": 6, "personalised": true, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/485/?format=api" ] }, { "id": 66, "name": "sRNASeq", "shortName": "", "description": "This training session is designed to help you to deal with small RNA sequences produced from the SGS (Second Generation Sequencing) technology particularly Illumina platforms (HiSeq). You will discover sequence file formats, learn about expression profiles of miRNA and other small non coding RNA and run different kind of analysis such as reads cleaning, alignment on a reference genome, detection and annotation of new and known miRNA, and expression quantification. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/srnaseq/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Small and long non-coding RNAs", "Analysis of RNAseq data" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 332, "name": "SHORT-READ ALIGNMENT AND SMALL SIZE VARIANTS CALLING", "shortName": "", "description": "This training session, organized jointly with the Sigenae platform, is designed to introduce NGS data, in particular Illumina Solexa technologies with command line. You will discover the new sequence formats, the assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection with the GATK pipeline and alignment visualization software.\r\n\r\nThis training is focused on the practice. It consists of modules with a large variety of exercises:\r\n\r\nDay 1 (09:00 am to 12:30 am): Fastq format / Sequence quality. Read mapping.\r\nDay 1 (14:00 pm to 17:00 pm): SAM format. Visualisation.\r\nDay 2 (09:00 am to 17:00 am): Variant calling. VCF format. 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