Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=180&ordering=-costs
{ "count": 378, "next": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=200&ordering=-costs", "previous": "https://catalogue.france-bioinformatique.fr/api/training/?format=api&limit=20&offset=160&ordering=-costs", "results": [ { "id": 298, "name": "LINUX", "shortName": "", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning sequence analysis. This training session has been designed to familiarize yourself with the platform resources and its organization. You will learn to access the platform from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.\r\n\r\nThis training is focused on practice. It consists of 3 modules with a large variety of exercises:\r\n\r\n- Connect to « genotoul » server (09:00 am to 10:30 am): Platform presentation, Linux basics, opening an user account, Putty installation, first connection.\r\n- Files and basics commands (10:45 am to 12:00 pm): types of files and secure access, file manipulation commands, text editors and viewers, disk space management .\r\n- Transfers and file manipulation (14:00 pm to 17:00 pm): download/transfer, compress/uncompress, utility commands and data extraction, output redirections.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/linux-2-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "none" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 10, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-09T09:42:16.231660Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Biologists" ], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 137, "name": "Linux slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20slides%20-%20Genotoul-bioinfo/?format=api" }, { "id": 138, "name": "Linux TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Linux%20TP%20-%20Genotoul-bioinfo/?format=api" } ], "learningOutcomes": "You will learn to access the platform genotoul bioinfo from your work station, what is an Linux environment and how to use it, how to create and manipulate files, how to transfer them from and to your personal computer.", "hoursPresentations": 3, "hoursHandsOn": 3, "hoursTotal": 6, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/476/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/608/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/447/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/667/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/632/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/528/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/719/?format=api" ] }, { "id": 381, "name": "HOW TO RUN A NF-CORE NEXTFLOW WORKFLOW ON GENOTOUL ?", "shortName": "Nextflow/nf-core", "description": "This training session is organized by the Genotoul bioinfo platform and aims at learning nf-core workflow submission, error understanding, resuming jobs and ressource reservation. We will present and practice:\r\n\r\nthe Nextflow software\r\nthe nf-core community and pipelines\r\nWhat is a singularity image ?\r\nWhere are installed the nf-core workflows ? Which version do I use ?\r\nHow to run a workflow and which config file is used ?\r\nWhich kind of error I can get ?\r\nHow to resume failed jobs?\r\nHow to handle genome indexes ?\r\nHow to monitor my process and then well configure my workflow ?\r\nHow do you best adjust CPU and RAM reservations?\r\nThis is NOT a bioinformatic training on a particular workflow or a training on how to develop a workflow.\r\n\r\nThis training is focused on practice. It consists of several modules with a large variety of exercises:\r\n\r\nStart at 09:00 am\r\nEnd at 17:00 pm", "homepage": "https://bioinfo.genotoul.fr/index.php/events/how-to-run-a-nf-core-nextflow-workflow-on-genotoul-2/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_0769" ], "keywords": [ "Nextflow" ], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/300/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 15, "name": "MIAT", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "http://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-01T11:57:33.124156Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Life scientists" ], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 143, "name": "Workflows nf-core - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Workflows%20nf-core%20-%20Genotoul-bioinfo/?format=api" } ], "learningOutcomes": "", "hoursPresentations": 1, "hoursHandsOn": 6, "hoursTotal": 7, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/636/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/722/?format=api" ] }, { "id": 333, "name": "Improve your command line skills by learning a few words of Perl", "shortName": "", "description": "This “Perl one-liners” training session is organized by the Sigenae platform. Perl one-liners are small and awesome Perl programs that fit in a single line of code and perform many operations such as replacing of text, spacing, deleting, calculation, manipulation in files and many more. This training will allow you to discover the power of Perl on the command line and learn how to use it to automate your file manipulations and command line generation with classical file formats such as tabulated text, fastq, sam/bam, and vcf.\r\n\r\nThis training lasts one day and is focused on practice. It consists of 3 parts with a large variety of exercises:\r\n\r\nIntroduction to Perl and its characteristics: Perl is a widely used programming language for data processing and task automation. We will introduce the main characteristics of Perl and discuss why it is particularly suited for biologists who want to manipulate files and generate command lines.\r\nPerl on the command line: we will show how to use Perl on the command line to perform common tasks, such as searching and replacing strings, merging files, and loop over lists of files.\r\nConcrete examples: we will present several concrete examples drawn from biology, such as extracting information from genomic sequence files, converting files between different formats, and generating command lines for data biology tools.\r\n \r\nThe session will take place in the room ‘salle de formation MIAT’ at INRAE center of Toulouse-Auzeville.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/onelineperl/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Perl Langage" ], "prerequisites": [ "Linux/Unix", "Cluster" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": null, "updated_at": "2025-12-01T11:56:55.465635Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 148, "name": "Perl One-liner - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Perl%20One-liner%20-%20Genotoul-bioinfo/?format=api" } ], "learningOutcomes": "", "hoursPresentations": 3, "hoursHandsOn": 3, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/531/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/723/?format=api" ] }, { "id": 315, "name": "Using sed and awk to modify large large text files", "shortName": "", "description": "Many analysis generate large result text files which have to be checked, merged, split, reduced. Several tools have been developed and are available on Unix to do this, including sed and AWK. During this course you will be trained to process large files with sed and AWK. Sed is tool enabling to select and process lines. You can easily insert, delete, modify, append lines to very large files with millions of lines. AWK will enable to perform more fine tuned file modifications based on columns. It includes also more mathematical and string functions. The course is based mainly on exercises with small sections presenting concepts and commands.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/modify-and-extract-information-from-large-text-files-day-2-3/", "is_draft": false, "costs": [ "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [ "http://edamontology.org/topic_3316" ], "keywords": [], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/338/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-09T10:31:46.651968Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [ "Biologists" ], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 146, "name": "Processing large files with sed awk - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Processing%20large%20files%20with%20sed%20awk%20%20-%20Genotoul-bioinfo/?format=api" } ], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/478/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/479/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/611/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/631/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/669/?format=api" ] }, { "id": 63, "name": "Cluster", "shortName": "", "description": "This training session is designed to help you deal with the platform compute cluster and data banks. You will launch your first processing batch on the cluster and will learn how to track and manage them. Organized jointly by the Sigenae and bioinfo genotoul platforms.", "homepage": "https://bioinfo.genotoul.fr/index.php/events/cluster-2/", "is_draft": false, "costs": [ "Priced", "Non-academic: 550€ + 20% taxes (TVA)", "Academic but non-INRAE: 170 € + 20% taxes (TVA)", "For INRAE's staff: 150 € no VAT charged;" ], "topics": [], "keywords": [ "Linux", "Cluster" ], "prerequisites": [ "Linux/Unix" ], "openTo": "Everyone", "accessConditions": "You need to register (via the website) and pay 170 euros a day for academic and 550 euros a day for a private.", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/344/?format=api", "https://catalogue.france-bioinformatique.fr/api/userprofile/739/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 37, "name": "MIAT - Mathématiques et Informatique Appliquées de Toulouse", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/MIAT%20-%20Math%C3%A9matiques%20et%20Informatique%20Appliqu%C3%A9es%20de%20Toulouse/?format=api" } ], "organisedByTeams": [ { "id": 22, "name": "Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/team/Genotoul-bioinfo/?format=api" } ], "logo_url": "https://bioinfo.genotoul.fr/wp-content/uploads/bioinfo_logo-rvb-petit.png", "updated_at": "2025-12-09T12:59:00.748410Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [ { "id": 140, "name": "Cluster TP - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20TP%20-%20Genotoul-bioinfo/?format=api" }, { "id": 139, "name": "Cluster Slides - Genotoul-bioinfo", "url": "https://catalogue.france-bioinformatique.fr/api/trainingmaterial/Cluster%20Slides%20-%20Genotoul-bioinfo/?format=api" } ], "learningOutcomes": "", "hoursPresentations": 3, "hoursHandsOn": 3, "hoursTotal": 6, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/475/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/477/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/610/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/261/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/633/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/668/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/529/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/720/?format=api" ] }, { "id": 306, "name": "Molecular Phylogeny - Level 1", "shortName": "Phylogénie moléculaire - Niveau 1", "description": "OBJECTIF\r\n- Savoir inférer un arbre phylogénétique et l'interpréter\r\n\r\nPRÉREQUIS\r\n- Savoir ce à quoi correspondent des séquences génétiques homologues\r\n- Avoir déjà utilisé les logiciels de base en bioinformatique\r\n- Connaître les notions de base en statistiques (tests, lois probabilistes usuelles, méthodes simples d'estimation de paramètres)\r\n- Avoir des notions de programmation\r\n\r\nPROGRAMME\r\n- Lignes de commandes Linux\r\n- Le format Newick\r\n- Dessin d'arbres\r\n- Alignements multiples et nettoyage\r\n- Modèles d'évolution\r\n- Choix de modèles\r\n- Définitions et propriétés des arbres\r\n- Méthodes de parcimonie\r\n- Méthodes de distance\r\n- Maximum de vraisemblance\r\n- Reconstruction phylogénétique Bayésienne\r\n- Bootstraps et autres supports de branches", "homepage": "", "is_draft": false, "costs": [ "1200 €" ], "topics": [ "http://edamontology.org/topic_0084", "http://edamontology.org/topic_3293", "http://edamontology.org/topic_3299" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/241/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/ATGClogox120_0.png", "updated_at": "2023-01-24T10:44:55.936489Z", "audienceTypes": [ "Professional (continued)" ], "audienceRoles": [], "difficultyLevel": "Novice", "trainingMaterials": [], "learningOutcomes": "To know how to infer a phylogenetic tree and interpret it.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": true, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/460/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/509/?format=api" ] }, { "id": 272, "name": "Molecular Phylogeny - Level 2", "shortName": "Phylogénie moléculaire - Niveau 2", "description": "OBJECTIF\r\n- Être capable de tester des hypothèses et d'ajuster des modèles permettant de comprendre l'évolution à l'échelle moléculaire\r\n\r\nPRÉREQUIS\r\n- Avoir déjà utilisé les logiciels de base en phylogénie moléculaire\r\n- Maîtriser les notions de base en statistiques (tests statistiques, principe du bootstrap, intervalles de confiances, etc.) et de probabilités (probabilités jointes / conditionnelles, théorème de Bayes, etc.)\r\n- Maîtriser un langage de programmation\r\n- Notions de phylogénie moléculaire\r\nAvoir suivi le stage \"Phylogénie moléculaire - formation de base\" ou niveau équivalent \r\n\r\nPROGRAMME\r\n- Phylogénétique et génétique des populations\r\n- Détection de sélection positive au sein de séquences codantes\r\n- Datation moléculaire : intégrer fossiles et molécules\r\n- Phylogénomique\r\n- Super-arbres et super-matrices, réconciliations d'arbres\r\n- Visualisation de l'information en phylogénie\r\n- Placement phylogénétique\r\n- Bases d'épidémiologie (modèles en compartiments, ODE, applications, etc)\r\n- Simulations selon une variété de modèles épidémiologiques\r\n- Phylodynamique : combiner épidémiologie et évolution", "homepage": "", "is_draft": false, "costs": [ "Priced", "1200 €" ], "topics": [], "keywords": [ "Phylogeny", "Selection Detection", "Phylogenomics" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/282/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "https://ressources.france-bioinformatique.fr/sites/default/files/ATGClogox120_0.png", "updated_at": "2023-01-24T10:49:17.913427Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/474/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/511/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/402/?format=api" ] }, { "id": 324, "name": "Python scripts for bioinformatics and Linux", "shortName": "Scripts en Python pour la bioinformatique et environnement Linux", "description": "OBJECTIFS\r\n- Connaître les principes et les avantages du système Linux\r\n- Connaître et savoir utiliser les commandes de base permettant de lancer des programmes sous Linux\r\n- Comprendre et savoir lancer des scripts\r\n- Être capable d'écrire des scripts en Python\r\n- Acquérir de l'autonomie pour effectuer des analyses bioinformatiques qui combinent plusieurs outils \r\n\r\nPRÉREQUIS\r\n- Notions de base en informatique : fichiers, répertoires, etc. \r\n\r\nPROGRAMME\r\n- Linux : lignes de commandes, principales commandes, redirection\r\n- Lancer, créer et modifier des scripts\r\n- Notions de variables, de boucles, de choix\r\n- Programmation de scripts : utilisation de paramètres et de variables, combinaison d'outils et de logiciels, écriture des résultats dans un ou plusieurs fichiers\r\n- Création d'un pipeline d'outils", "homepage": "", "is_draft": false, "costs": [ "1200 €" ], "topics": [], "keywords": [ "Linux", "Python Language" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 12, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/528/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 1, "name": "CNRS formation entreprises", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS%20formation%20entreprises/?format=api" } ], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "https://www.france-bioinformatique.fr/sites/default/files/ATGClogox120_0.png", "updated_at": "2025-01-23T13:50:29.570608Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/512/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/703/?format=api" ] }, { "id": 220, "name": "Annotation formelle pour la fouille de texte", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], 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