Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=160&ordering=contacts
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Les formations continues proposées dans le domaine de la bioinformatique sont également ouvertes aux étudiants de l'Ecole Doctorale, et permettent de valider un module de biologie. Forme 2 à 3 doctorants par an.\n \n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [ "Autre (Diplôme universitaire, école d'ingénieur ...)" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 64, "name": "Read alignment and SNP calling", "shortName": "", "description": "This training session, organized jointly with the Sigenae platform, is designed to help you deal with NGS data, in particular Roche 454 and Illumina Solexa technologies. You will discover the new sequence formats, the new assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection (with the GATK pipeline), polymorphisms annotation and alignment visualization software. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-ca…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Data Analysis", "Variant analysis", "Genomics (DNA-seq)" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 257, "name": "Metabarcoding analyses (using FROGS in Galaxy and Phyloseq)", "shortName": "", "description": "This course offers an introduction to metabarcoding analyses at two different levels/steps: bioinformatics with FROGS pipeline in the Galaxy environment, biostatistics with PhyloSeq R package. This includes preprocessing, clustering and OTU picking, taxonomic assignation, estimation of diversity, visualization of statistics results.\r\nPrerequisites\r\nGalaxy, R knowledge\r\n\r\nProgram\r\nIntroduction to metagenomics and metabarcoding\r\nPre-processing, Clustering, taxonomic affiliation (FROGS)\r\nHandling and visualizing OTU table using PhyloSeq R package (PhyloSeq)\r\n\r\n\r\nLearning objectives\r\nManipulate tools available for metabarcoding analysis\r\nStudy sample diversity by using NGS and post-NGS analysis tools\r\nVisualize diversity metrics in metabarcoding approach\r\n\r\n\r\nInstructors\r\nJulie Orjuela - julie.orjuela@ird.fr\r\nFlorentin Constancias - florentin.constancias@cirad.fr\r\nAlexis Dereeper - alexis.dereeper@ird.fr", "homepage": "https://southgreenplatform.github.io/trainings//metabarcoding/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2023-01-24T10:25:28.170059Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/566/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/389/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/535/?format=api" ] }, { "id": 276, "name": "Introduction to Machine Learning Using R", "shortName": "", "description": "With the rise in high-throughput sequencing technologies, the volume of omics data has grown exponentially in recent times and a major issue is to mine useful knowledge from these data which are also heterogeneous in nature. Machine learning (ML) is a discipline in which computers perform automated learning without being programmed explicitly and assist humans to make sense of large and complex data sets. The analysis of complex high-volume data is not trivial and classical tools cannot be used to explore their full potential. Machine learning can thus be very useful in mining large omics datasets to uncover new insights that can advance the field of bioinformatics.\r\n\r\nThis 2-day course will introduce participants to the machine learning taxonomy and the applications of common machine learning algorithms to omics data. The course will cover the common methods being used to analyse different omics data sets by providing a practical context through the use of basic but widely used R libraries. The course will comprise a number of hands-on exercises and challenges where the participants will acquire a first understanding of the standard ML processes, as well as the practical skills in applying them on familiar problems and publicly available real-world data sets.", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 30, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 8, "name": "Elixir", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/Elixir/?format=api" }, { "id": 4, "name": "IFB - ELIXIR-FR", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/IFB%20-%20ELIXIR-FR/?format=api" } ], "organisedByTeams": [ { "id": 29, "name": "IFB Core", "url": "https://catalogue.france-bioinformatique.fr/api/team/IFB%20Core/?format=api" } ], "logo_url": "https://www.dissco.eu/wp-content/uploads/Elixir-Europe-logo-1.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/415/?format=api" ] }, { "id": 213, "name": "Analyse bioinformatique de données RNA-Seq sous Galaxy", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/342/?format=api" ] }, { "id": 274, "name": "Principes FAIR pour la gestion des données de recherche en sciences de la vie", "shortName": "FAIR data", "description": "Présentation et application des principes FAIR de gestion des données dans un projet bioinformatique.\r\nL’Institut Français de Bioinformatique (IFB) organise une formation à destination de bioinformaticiens, biologistes et médecins impliqués dans des projets d’analyse bioinformatique de jeux de données omiques et souhaitant mettre en œuvre les principes “FAIR” (Facile à trouver, Accessible, Interopérable, Réutilisable) tout au long du déroulement du projet. La formation abordera les différents points fondamentaux (théoriques, pratiques, juridiques) en lien avec la politique nationale d’ouverture des données de la recherche et présentera sous forme de séances pratiques les ressources nationales accessibles à la communauté scientifique ainsi que les solutions proposées par l’IFB pour gérer les données d’un projet de recherche.", "homepage": "https://ifb-elixirfr.github.io/IFB-FAIR-data-training/", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_3420", "http://edamontology.org/topic_3571", "http://edamontology.org/topic_0219" ], "keywords": [ "Données" ], "prerequisites": [], "openTo": "Everyone", "accessConditions": "public", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [ { "id": 43, "name": "IFB-core", "url": 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exemples de jeux de données omiques ;\r\n- Le choix des métadonnées : panorama des ressources existantes pour choisir des métadonnées et mise en pratique pour annoter des jeux de données omiques en vue de la publication des données dans une banque internationale ou un dataverse institutionnel.", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/418/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/404/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/465/?format=api" ] }, { "id": 212, "name": "NGS sous Galaxy", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": 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