Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=100&ordering=-topics
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It is intended for new users, with the goals of improving user productivity and minimizing the obstacles. The HPC Southgreen cluster are presented, together with the tools to be able to use it. Module load notion, interactive usage and batch jobs submittions will be developped.\nPrerequisites\nLinux Basics\n\nProgram\nIntroduction to HPCs architecture\nDiscover Sun grid Engine (SGE)\nData Management on clusters\nInteractive Usage\nSubmit batch jobs\n\n\nLearning objectives\nAfter this course, participants should be able to:\nUse the HPC resources interactively\nManage data copies\nUse module load\nsubmit batch jobs\n\n\nInstructors\n\n\nNdomassi Tando (NT) - ndomassi.tando@ird.fr\nBertrand Pitollat(BP) - bertrand.pitollat@cirad.fr\nAlexis Dereeper (AD) - alexis.dereeper@ird.fr\n\n", "homepage": "https://southgreenplatform.github.io/trainings//HPC/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/384/?format=api" ] }, { "id": 265, "name": "WAVES Training", "shortName": "", "description": "Workshop to train users to WAVES : a Web Application for Versatile Enhanced Bioinformatic Services\n", "homepage": "http://www.atgc-montpellier.fr/waves/trainings.php", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "La formation s'adresse à toute personne souhaitant installer/administer un serveur WAVES\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [ { "id": 3, "name": "IFB", "url": "https://catalogue.france-bioinformatique.fr/api/eventsponsor/IFB/?format=api" } ], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 7, "name": "ATGC", "url": "https://catalogue.france-bioinformatique.fr/api/team/ATGC/?format=api" } ], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/194/?format=api" ] }, { "id": 131, "name": "Galaxy : RNAseq de novo/avec référence & cleaning", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Analysis of RNAseq data", "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 137, "name": "Cours Pasteur Analyse des Génomes", "shortName": "", "description": "Chaque année, ce cours théorique et pratique d’une durée de sept semaines fait le tour\ndes concepts, techniques et outils nécessaires à l'étude des génomes, des étapes expérimentales à l’analyse des résultats. Il illustre les différents aspects de la génomique et de ses applications en se basant sur les résultats les plus récents de la recherche - voir plus\n", "homepage": "http://www.pasteur.fr/fr/enseignement/cours-pasteur/pole-mecanismes-du-vivant/an…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Biostatistics", "Sequence analysis", "Comparative genomics", "NGS Sequencing Data Analysis" ], "prerequisites": [ "Master" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/267/?format=api" ] }, { "id": 25, "name": "Modélisation 3D des protéines", "shortName": "", "description": "\nObjectifs\n\nConnaître les bases de la modélisation moléculaire : modélisation par homologie, arrimage (docking) de ligands, mutations in silico. Une demi-journée dédiée à la modélisation de vos protéines d'intérêts.\n\nProgramme\n\n- Visualiser : Connaître les bases de la visualisation des protéines en 3D avec PYmol.\n- Comprendre : Analyse des structures 3D de protéines (RX ou RMN). Recherche d'homologues avec HHpred, I-Tasser, etc... Modélisation par homologie avec Modeller, Phyre2. Principes et applications.\n- Prédire : Docking de ligands avec Autodock. Prédiction des mutations in silico. Principes et applications.\nL'accent sera mis sur les points forts et les limites des différents outils et la pratique avec de nombreux \"hand- on tutorials\"\nPlus une session dédiée : «bring your own protein».\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Autre", "Protein/protein interaction modelisation", "proteins/peptides and proteins/nucleic acids" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/248/?format=api" ] }, { "id": 339, "name": "Cycle « Analyse de données de séquençage à haut-débit » - Module 1/6 : Analyses ADN - version 2020", "shortName": "", "description": "Bilille propose chaque année un cycle de formation d'introduction à l'analyse des données de séquençage à haut débit.\r\nCe cycle est composé de 6 modules, à la carte : \r\n- Module 1: Analyses ADN\r\n- Module 2: Analyses de variants\r\n- Module 3 : Métagénomique\r\n- Module 4: ChIP-seq\r\n- Module 5: Analyses RNA-seq, bioinformatique\r\n- Module 6: Analyses RNA-seq, biostatistique\r\nLes fiches descriptives sont accessibles sur le site de Bilille. Chaque module comprend des présentations générales et des séances pratiques sur ordinateur, avec Galaxy.\r\nLes objectifs du module 1 sont :\r\n- Apprendre à manipuler des données de séquençage d’ADN\r\n- Réaliser des contrôles de qualité et du nettoyage des lectures\r\n- Présenter les méthodes et outils d'alignement\r\n- Réaliser des contrôles de qualité et des alignements sur une référence\r\n- Introduction à l’assemblage des lectures sans référence\r\n- Utiliser la plateforme Galaxy pour ces analyses", "homepage": "https://bilille.univ-lille.fr/training/training-offer", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Galaxy - Basic usage" ], "openTo": "Internal personnel", "accessConditions": "Etre familier avec la plate-forme web Galaxy (idéalement avoir suivi la formation bilille « Initiation à Galaxy »)", "maxParticipants": null, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/487/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [ { "id": 66, "name": "University of Lille", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/University%20of%20Lille/?format=api" }, { "id": 56, "name": "INSERM", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/INSERM/?format=api" }, { "id": 52, "name": "CNRS", "url": "https://catalogue.france-bioinformatique.fr/api/organisation/CNRS/?format=api" } ], "organisedByTeams": [ { "id": 3, "name": "Bilille", "url": "https://catalogue.france-bioinformatique.fr/api/team/Bilille/?format=api" } ], "logo_url": "https://bilille.univ-lille.fr/fileadmin/_processed_/9/2/csm_logo_bilille_complet_65be9bda8b.png", "updated_at": "2024-12-09T17:40:27.778617Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/546/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/544/?format=api" ] }, { "id": 230, "name": "Détection de variants à partir de données NGS", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/360/?format=api" ] }, { "id": 146, "name": "Introduction à la Phylogénie Moléculaire : CONCEPTS, METHODES ET OUTILS", "shortName": "", "description": "Le C3BI (Institut Pasteur) propose des cours pour acquérir les notions théoriques de phylogénie et maitriser les outils et logiciels.\nLes cours d’”Introduction à la phylogénie moléculaire” sont ouverts à tous (inscription obligatoire pour les cours et travaux pratiques dans la limite des places disponibles).\nIl est possible de ne s’inscrire que pour la partie théorique. Ces cours sont dispensés en langue française.\nLundi 14 Novembre (9h30-12h30): Présentation des principales banques de données et BLAST\nMardi 15 Novembre (9h30-11h00): Alignements Multiples\nMercredi 16 Novembre (9h30-11h00): Introduction à la Phylogénie\nJeudi 17 Novembre (9h30-11h00): Modèles d’évolution\nVendredi 18 Novembre (9h30-11h00): Approches par Maximum de Parcimonie\nLundi 21 Novembre (9h30-11h00): Méthodes de Distance\nMardi 22 Novembre (9h30-11h00): Méthodes de Vraisemblance\nMercredi 23 Novembre (13h30-15h00): Reconstruction Phylogénétique & Approches Bayésiennes\nJeudi 24 Novembre (9h30-11h00): Inférence des Forces Sélectives\nVendredi 25 Novembre (9h30-11h00): Choix des Méthodes et Interprétation\nprogramme complet \ninscription par mail à formation@pasteur.fr (avec le sujet “Phylogénie Moléculaire”) + formulaire \n", "homepage": "https://c3bi.pasteur.fr/training-introduction-a-la-phylogenie-moleculaire-concep…", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Phylogeny" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "ouvert à tous (chercheur,ingénieur, étudiant) mais inscription obligatoire par mail à formation@pasteur.fr (avec le sujet “Phylogénie Moléculaire”) + formulaire \n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/275/?format=api" ] }, { "id": 250, "name": "Linux For Jedi", "shortName": "", "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.", "homepage": "https://southgreenplatform.github.io/trainings/linuxJedi/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 15, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Intermediate", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 4, "hoursHandsOn": 10, "hoursTotal": 14, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/469/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/382/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/560/?format=api" ] }, { "id": 177, "name": "Infrastructure de calcul et analyses en bio-informatique", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/302/?format=api" ] }, { "id": 135, "name": "hands-on NGS course", "shortName": "", "description": "The aim of this course is to provide students with theory and practical\ntools to analyze Next Generation Sequencing (NGS) data. The course is\ncomposed of a theory and practice lessons . In the first week theory\nsessions will cover the main kind of HTS analyses (re-sequencing and\nvariant analysis, de-novo sequencing, transcriptomics, ChIP-Seq,\nmetagenomics), in addition to some general bioinformatics tools and\nBiostatistics. The second week is dedicated to practice, in which the\nstudents work with their own data in small groups with a mentor that\nguides them. The practice week is designed so the course is of immediate\nuse to each student. We expect the students to go back to their countries\nwith the necessary knowledge to continue working on their own data.\n", "homepage": "http://c3bi.pasteur.fr", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Methodology", "NGS Data Analysis", "Metagenomics", "Gene expression regulation analysis", "metatranscriptomics", "Chip-Seq", "Variant analysis", "Transcriptomics (RNA-seq)", "Genomics (DNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "belonging to the Institut Pasteur International Network (RIIP) and the University of Sao Paulo.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 238, "name": "Rrr - Rapide IntRoduction à R (R pour la génomique)", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/369/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/370/?format=api" ] }, { "id": 20, "name": "Traitement des données NGS sous Galaxy", "shortName": "", "description": "http://migale.jouy.inra.fr/?q=fr/formations\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "http://migale.jouy.inra.fr/?q=fr/formations\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/533/?format=api" ] }, { "id": 168, "name": "Introduction à R", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/292/?format=api" ] }, { "id": 178, "name": "Développement d'outils galaxy pour l'imagerie", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/303/?format=api" ] }, { "id": 19, "name": "Analyse primaire de données issues de séquenceurs nouvelle génération sous Galaxy", "shortName": "", "description": "\nObjectifs\n\nConnaître les concepts et méthodes bioinformatiques utilisés pour l’analyse primaire de données issues de NGS. Application aux outils de mapping et d’assemblage.\nProgramme\nThéorie \n•Présentation des différents types de séquenceurs\n•Les grandes familles d’algorithmes de mapping de lectures courtes d’assemblage et les outils associés\nPratique\nAnalyse des données de séquençage d’un génome bactérien\n•Contrôle qualité\n•Assemblage de-novo\noNettoyage des données\noAssemblage\noVisualisation et statistiques sur l’assemblage\n•Comparaison à un génome de référence :\noMapping des lectures sur un génome proche\noVisualisation du mapping \n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/246/?format=api" ] } ] }
