Training List
Handles creating, reading and updating training events.
GET /api/training/?format=api&offset=100&ordering=-organisedByOrganisations
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This pipeline will evolve\nin the context of a collaboration between the Leishield partners and the C3BI, taking into account the difficulties to analyze and interpret the sequence data generated, and the specific needs of each Consortium node. A future Workshop will be organized in June 2016 to tackle all these questions, and to have a follow-up on the analysis.\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "belonging to the Leishield consortium.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 5, "name": "Partek Workshop", "shortName": "", "description": "Introduction to Partek® software and the principles of RNA-seq data analysis DNA-Seq analysis and annotations with Partek® Genomics Suite® Hands on analysis in Partek® Flow® including: Data import and sample annotation, Pre and post alignment quality control, Gene and transcript quantification, Detection of differential expression using powerful gene specific modeling\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Bioinformatics & Biomedical" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Aucune\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 25, "name": "Modélisation 3D des protéines", "shortName": "", "description": "\nObjectifs\n\nConnaître les bases de la modélisation moléculaire : modélisation par homologie, arrimage (docking) de ligands, mutations in silico. Une demi-journée dédiée à la modélisation de vos protéines d'intérêts.\n\nProgramme\n\n- Visualiser : Connaître les bases de la visualisation des protéines en 3D avec PYmol.\n- Comprendre : Analyse des structures 3D de protéines (RX ou RMN). Recherche d'homologues avec HHpred, I-Tasser, etc... Modélisation par homologie avec Modeller, Phyre2. Principes et applications.\n- Prédire : Docking de ligands avec Autodock. Prédiction des mutations in silico. Principes et applications.\nL'accent sera mis sur les points forts et les limites des différents outils et la pratique avec de nombreux \"hand- on tutorials\"\nPlus une session dédiée : «bring your own protein».\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Autre", "Protein/protein interaction modelisation", "proteins/peptides and proteins/nucleic acids" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/248/?format=api" ] }, { "id": 26, "name": "Initiation à Perl", "shortName": "", "description": "\nObjectifs\n\nInitiation à la programmation.\nIdentifier les possibilités offertes par l’écriture de quelques lignes de code.\nRéalisation de tâches simples d’extraction et de reformatage d’informations issues de fichiers texte.\n \n\n \nProgramme\n\n- Présentation de PERL\n- Variables PERL\n- Structures de contrôle\n- Gestion de fichiers\n- Réalisation de programmes simples\n \nIllustration avec des exercices de manipulation de fichiers de séquences et de fichiers de résultats d’outils bioinformatiques. \n \n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "Perl Langage" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/249/?format=api" ] }, { "id": 64, "name": "Read alignment and SNP calling", "shortName": "", "description": "This training session, organized jointly with the Sigenae platform, is designed to help you deal with NGS data, in particular Roche 454 and Illumina Solexa technologies. You will discover the new sequence formats, the new assembly formats and the known biases of these technologies. You will use mapping on reference genome software, polymorphisms detection (with the GATK pipeline), polymorphisms annotation and alignment visualization software. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/alignment-and-small-size-variants-ca…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Data Analysis", "Variant analysis", "Genomics (DNA-seq)" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 250, "name": "Linux For Jedi", "shortName": "", "description": "This course offers to develop and enhance advanced Linux shell command line and scripting skills for the processing and analysis of NGS data. We will work on a HPC server and use linux powerful commands to allow to analyze big amount of biological data.", "homepage": "https://southgreenplatform.github.io/trainings/linuxJedi/", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [ "Linux - Basic Knowledge" ], "openTo": "Internal personnel", "accessConditions": "Open to South Green close collaborators", "maxParticipants": 15, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 24, "name": "South Green", "url": "https://catalogue.france-bioinformatique.fr/api/team/South%20Green/?format=api" } ], "logo_url": "https://southgreenplatform.github.io/trainings//images/southgreenlong.png", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "Intermediate", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 4, "hoursHandsOn": 10, "hoursTotal": 14, "personalised": false, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/469/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/382/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/560/?format=api" ] }, { "id": 198, "name": "Formation librairie GATB", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/325/?format=api" ] }, { "id": 241, "name": "Analyse avancée de séquences sur mesure", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/373/?format=api" ] }, { "id": 82, "name": "Master Biostatistiques", "shortName": "", "description": "Deux objectifs sont visés par la formation. Le premier est de former des chercheurs ou enseignants-chercheurs dans le domaine de la statistique théorique ou appliquée. Le deuxième objectif est de former des statisticiens de haut niveau pour des organismes de recherche ou des entreprises.\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [], "prerequisites": [ "Master" ], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 104, "name": "Initiation à la programmation en R", "shortName": "", "description": "Se familiariser avec R dans le but d’utiliser ce logiciel pour faire des modèles linéaires\n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Programming Languages & Computer Sciences", "R Language" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Personnel IHU-A-ICM, gratuit\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 33, "name": "Analyse statistique RNA-seq sous Galaxy", "shortName": "", "description": "\nObjectifs\n\nSe sensibiliser aux concepts et méthodes statistiques pour l'analyse de données transcriptomiques de type RNA-Seq.\nComprendre le matériel et méthodes (normalisation et tests statistiques) d'un article\ndu domaine.\nComprendre les particularités liées à la nature des données.\n\n \n \nProgramme\n\nPlanification expérimentale des expériences RNA-Seq (identification des biais, répétitions, biais contrôlables).\nNormalisation et analyse différentielle : recherche de \"régions d'intérêt\" différentiellement exprimées (modèle linéaire généralisé).\nPrise en compte de la multiplicité des tests.\nLe cours sera illustré par différents exemples et un jeu de données sera traité à l'aide du package R SARTools (basé sur les packages R DESeq2 et edgeR) dans les environnements Galaxy et RStudio.\n", "homepage": "http://migale.jouy.inra.fr/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Analysis of RNAseq data", "Galaxy" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "Ce cycle est ouvert à l'ensemble des agents de l'INRA et aux extérieurs.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/255/?format=api" ] }, { "id": 314, "name": "Workflow4metabolomics", "shortName": "W4E", "description": "Processing, statistical analysis, and annotation of metabolomics data is a complex task for experimenters since it involves many steps and requires a good knowledge of both the methodology and software tools. The Workflow4Metabolomics.org (W4M) online infrastructure provides a user-friendly and high-performance environment with advanced computational modules for building, running, and sharing complete workflows for LC-MS, GC-MS, FIA and NMR analysis. Such features are of major values for teaching computational metabolomics to experimenters, and previous courses using W4M since 2014 have been very successful.", "homepage": "https://workflow4metabolomics.org/", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "", "maxParticipants": 20, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": null, "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/472/?format=api" ] }, { "id": 186, "name": "Linux Initiation", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/311/?format=api" ] }, { "id": 160, "name": "Cluster", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/283/?format=api" ] }, { "id": 379, "name": "Manipulating & Visualizing Data with R", "shortName": "R - DataViz", "description": "Objectifs\r\n- Importer, structurer, transformer et exporter un tableau de données avec R\r\n- Générer des figures de qualité pour, par exemple, une publication scientifique\r\n\r\nProgramme\r\n- Introduction au tidyverse (metapackage pour manipuler, visualiser et analyser des données)\r\n- Import et export de tableaux de données (csv, excel, google sheet, etc.)\r\n- Manipulation de tableaux de données avec dplyr et tidyr (filtre, aggregation, jointure)\r\n- Manipulation de chaînes de caractères et de dates avec stringr et lubridate\r\n- Introduction aux concepts de visualisation de données\r\n- Apprendre à utiliser ggplot2 grâce à esquisse\r\n- Partager ses résultats avec Quarto", "homepage": "https://abims.sb-roscoff.fr/module/r_dataviz", "is_draft": false, "costs": [ "Free" ], "topics": [ "http://edamontology.org/topic_0092" ], "keywords": [], "prerequisites": [], "openTo": "Everyone", "accessConditions": "Preregistration required using: https://abims.sb-roscoff.fr/ateliers/preinscription", "maxParticipants": 18, "contacts": [ "https://catalogue.france-bioinformatique.fr/api/userprofile/299/?format=api" ], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [ { "id": 4, "name": "ABiMS", "url": "https://catalogue.france-bioinformatique.fr/api/team/ABiMS/?format=api" } ], "logo_url": "https://abims.sb-roscoff.fr/sites/default/files/abims.png", "updated_at": "2026-02-05T08:15:08.934519Z", "audienceTypes": [ "Undergraduate", "Graduate", "Professional (initial)", "Professional (continued)" ], "audienceRoles": [ "All" ], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": 2, "hoursHandsOn": 5, "hoursTotal": 7, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/619/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/775/?format=api", "https://catalogue.france-bioinformatique.fr/api/event/716/?format=api" ] }, { "id": 213, "name": "Analyse bioinformatique de données RNA-Seq sous Galaxy", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/342/?format=api" ] }, { "id": 234, "name": "Standardizing phenotyping experimental data", "shortName": "", "description": "", "homepage": "", "is_draft": false, "costs": [ "Free" ], "topics": [], "keywords": [], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/364/?format=api" ] }, { "id": 72, "name": "Galaxy : Reads alignment and SNP calling", "shortName": "", "description": "As the command line training but with Galaxy. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/reads-alignment-and-small-size-varia…", "is_draft": false, "costs": [ "Priced" ], "topics": [], "keywords": [ "NGS Data Analysis", "Galaxy", "Variant analysis", "Genomics (DNA-seq)", "NGS Sequencing Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [ "https://catalogue.france-bioinformatique.fr/api/event/262/?format=api" ] }, { "id": 66, "name": "sRNASeq", "shortName": "", "description": "This training session is designed to help you to deal with small RNA sequences produced from the SGS (Second Generation Sequencing) technology particularly Illumina platforms (HiSeq). You will discover sequence file formats, learn about expression profiles of miRNA and other small non coding RNA and run different kind of analysis such as reads cleaning, alignment on a reference genome, detection and annotation of new and known miRNA, and expression quantification. Organized jointly by the Sigenae and bioinfo genotoul platforms.\n", "homepage": "http://bioinfo.genotoul.fr/index.php/events/srnaseq/", "is_draft": false, "costs": [], "topics": [], "keywords": [ "NGS Data Analysis", "Small and long non-coding RNAs", "Analysis of RNAseq data" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "You need to register (via the website) and pay 165 euros a day for academic and 550 euros a day for a private.\n", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] }, { "id": 113, "name": "Formation continue INRA", "shortName": "", "description": "Bioanalyse, analyse de séquences (alignement, blast), bases de données, analyse de NGS via galaxy (Chi-Seq, RNA-seq).\nFouille de texte et de données pour l'analyse de promoteurs et la construction de réseaux biologiques (réseau RULBI). Forme une dizaine de personnes par session.\n \n", "homepage": "", "is_draft": false, "costs": [], "topics": [], "keywords": [ "Autre", "NGS Data Analysis" ], "prerequisites": [], "openTo": "Internal personnel", "accessConditions": "", "maxParticipants": null, "contacts": [], "elixirPlatforms": [], "communities": [], "sponsoredBy": [], "organisedByOrganisations": [], "organisedByTeams": [], "logo_url": "", "updated_at": "2022-06-02T11:50:50.812642Z", "audienceTypes": [], "audienceRoles": [], "difficultyLevel": "", "trainingMaterials": [], "learningOutcomes": "", "hoursPresentations": null, "hoursHandsOn": null, "hoursTotal": null, "personalised": null, "event_set": [] } ] }