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"uri": "http://edamontology.org/topic_3510",
"label": "Protein sites, features and motifs",
"synonyms": [
"Protein sequence features",
"Signal peptide cleavage sites"
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"description": "The biology, archival, detection, prediction and analysis of positional features such as functional and other key sites, in protein sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them."
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"id": 66,
"uri": "http://edamontology.org/topic_3511",
"label": "Nucleic acid sites, features and motifs",
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"Nucleic acid functional sites",
"Primer binding sites",
"Nucleic acid sequence features",
"Sequence tagged sites"
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"description": "The biology, archival, detection, prediction and analysis of positional features such as functional and other key sites, in nucleic acid sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them."
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"id": 22,
"uri": "http://edamontology.org/topic_0196",
"label": "Sequence assembly",
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"Assembly"
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"id": 41,
"uri": "http://edamontology.org/topic_0157",
"label": "Sequence composition, complexity and repeats",
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"Sequence complexity",
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"Repeat sequences",
"Sequence composition",
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"description": "The archival, processing and analysis of the basic character composition of molecular sequences, for example character or word frequency, ambiguity, complexity, particularly regions of low complexity, and repeats or the repetitive nature of molecular sequences."
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"id": 38,
"uri": "http://edamontology.org/topic_0080",
"label": "Sequence analysis",
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"uri": "http://edamontology.org/topic_0160",
"label": "Sequence sites, features and motifs",
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"Sequence profiles",
"Sequence sites",
"Sequence motifs",
"HMMs",
"Functional sites",
"Sequence features"
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"description": "The archival, detection, prediction and analysis of positional features such as functional and other key sites, in molecular sequences and the conserved patterns (motifs, profiles etc.) that may be used to describe them."
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"id": 39,
"uri": "http://edamontology.org/topic_0097",
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"DNA melting",
"RNA structure alignment",
"RNA structure",
"Nucleic acid thermodynamics",
"RNA alignment"
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"uri": "http://edamontology.org/topic_0091",
"label": "Bioinformatics",
"synonyms": null,
"description": "The archival, curation, processing and analysis of complex biological data."
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"uri": "http://edamontology.org/topic_2269",
"label": "Statistics and probability",
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"Bayesian methods",
"Gaussian processes",
"Probability",
"Markov processes",
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"description": "The application of statistical methods to biological problems."
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"id": 110,
"uri": "http://edamontology.org/topic_0804",
"label": "Immunology",
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"description": "The application of information technology to immunology such as immunological processes, immunological genes, proteins and peptide ligands, antigens and so on."
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"uri": "http://edamontology.org/topic_3063",
"label": "Medical informatics",
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"description": "The application of information technology to health, disease and biomedicine."
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"label": "Transcriptomics",
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"id": 105,
"uri": "http://edamontology.org/topic_3169",
"label": "ChIP-seq",
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"ChIP-sequencing",
"Chip sequencing",
"Chip Seq",
"ChIP-exo",
"Chip-sequencing"
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"description": "The analysis of protein-DNA interactions where chromatin immunoprecipitation (ChIP) is used in combination with massively parallel DNA sequencing to identify the binding sites of DNA-associated proteins."
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"id": 27,
"uri": "http://edamontology.org/topic_0203",
"label": "Gene expression",
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"DNA chips",
"DNA microarrays",
"Gene translation",
"Transcription",
"Expression",
"Gene expression profiling",
"Codon usage",
"Gene transcription"
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"description": "The analysis of levels and patterns of synthesis of gene products (proteins and functional RNA) including interpretation in functional terms of gene expression data."
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"id": 8,
"uri": "http://edamontology.org/topic_3077",
"label": "Data acquisition",
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"description": "The acquisition of data, typically measurements of physical systems using any type of sampling system, or by another other means."
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{
"id": 90,
"uri": "http://edamontology.org/topic_0781",
"label": "Virology",
"synonyms": null,
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"id": 115,
"uri": "http://edamontology.org/topic_0166",
"label": "Protein structural motifs and surfaces",
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"Protein structural features",
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"Structural motifs",
"Protein structural motifs"
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"description": "Structural features or common 3D motifs within protein structures, including the surface of a protein structure, such as biological interfaces with other molecules."
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"id": 93,
"uri": "http://edamontology.org/topic_0199",
"label": "Genetic variation",
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"DNA variation",
"Somatic mutations",
"Genomic variation",
"Mutation",
"Polymorphism"
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"description": "Stable, naturally occuring mutations in a nucleotide sequence including alleles, naturally occurring mutations such as single base nucleotide substitutions, deletions and insertions, RFLPs and other polymorphisms."
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{
"id": 20,
"uri": "http://edamontology.org/topic_0154",
"label": "Small molecules",
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"Toxins and targets",
"Drugs and target structures",
"Drug targets",
"Peptides",
"Drug structures",
"Metabolite structures",
"Amino acids",
"Toxins",
"Targets",
"Chemical structures",
"Target structures"
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"description": "Small molecules of biological significance, typically archival, curation, processing and analysis of structural information."
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{
"id": 116,
"uri": "http://edamontology.org/topic_3542",
"label": "Protein secondary structure",
"synonyms": [
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"Protein features (secondary structure)"
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"description": "Secondary structure (predicted or real) of a protein, including super-secondary structure."
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