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"id": 57,
"uri": "http://edamontology.org/topic_3064",
"label": "Developmental biology",
"synonyms": [
"Development"
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"description": "How organisms grow and develop."
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{
"id": 37,
"uri": "http://edamontology.org/topic_3948",
"label": "Immunoinformatics",
"synonyms": [
"Computational immunology"
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"description": "Immunoinformatics is the field of computational biology that deals with the study of immunoloogical questions. Immunoinformatics is at the interface between immunology and computer science. It takes advantage of computational, statistical, mathematical approaches and enhances the understanding of immunological knowledge."
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{
"id": 123,
"uri": "http://edamontology.org/topic_3676",
"label": "Exome sequencing",
"synonyms": [
"Exome",
"Exome capture",
"WES",
"Whole exome sequencing",
"Targeted exome capture",
"Exome analysis"
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"description": "Laboratory technique to sequence all the protein-coding regions in a genome, i.e., the exome."
},
{
"id": 101,
"uri": "http://edamontology.org/topic_3673",
"label": "Whole genome sequencing",
"synonyms": [
"De novo genome sequencing",
"WGS",
"Genome sequencing",
"Whole genome resequencing"
],
"description": "Laboratory technique to sequence the complete DNA sequence of an organism's genome at a single time."
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{
"id": 98,
"uri": "http://edamontology.org/topic_3518",
"label": "Microarray experiment",
"synonyms": [
"miRNA array",
"Proprietary platform micoarray",
"MicroRNA array",
"Gene expression microarray",
"Multichannel microarray",
"RNA microarrays",
"Microarrays",
"mRNA microarray",
"Reverse phase protein array",
"One channel microarray",
"aCGH microarray",
"Tissue microarray",
"SNP array",
"Methylation array",
"Tiling arrays",
"RNA chips",
"Genotyping array",
"Two channel microarray"
],
"description": "Microarray experiments including conditions, protocol, sample:data relationships etc."
},
{
"id": 3,
"uri": "http://edamontology.org/topic_0798",
"label": "Mobile genetic elements",
"synonyms": [
"Transposons"
],
"description": "Mobile genetic elements, such as transposons, Plasmids, Bacteriophage elements and Group II introns."
},
{
"id": 77,
"uri": "http://edamontology.org/topic_0602",
"label": "Molecular interactions, pathways and networks",
"synonyms": [
"Networks",
"Gene regulatory networks",
"Interactome",
"Molecular interactions",
"Disease pathways",
"Biological pathways",
"Signaling pathways",
"Pathways",
"Environmental information processing pathways",
"Cellular process pathways",
"Genetic information processing pathways",
"Signal transduction pathways",
"Biological models",
"Metabolic pathways",
"Biological networks",
"Interactions"
],
"description": "Molecular interactions, biological pathways, networks and other models."
},
{
"id": 97,
"uri": "http://edamontology.org/topic_0632",
"label": "Probes and primers",
"synonyms": [
"Primers",
"Primer quality",
"Probes"
],
"description": "Molecular probes (e.g. a peptide probe or DNA microarray probe) or PCR primers and hybridisation oligos in a nucleic acid sequence."
},
{
"id": 84,
"uri": "http://edamontology.org/topic_3810",
"label": "Agricultural science",
"synonyms": [
"",
"Plant pathology",
"Animal nutrition",
"Agricultural biotechnology",
"Horticulture",
"Animal husbandry",
"Agricultural economics",
"Phytomedicine",
"Food process engineering",
"Plant breeding",
"Animal breeding",
"Farming systems research",
"Plant nutrition",
"Food security",
"Soil science",
"Plant cultivation"
],
"description": "Multidisciplinary study, research and development within the field of agriculture."
},
{
"id": 103,
"uri": "http://edamontology.org/topic_0659",
"label": "Functional, regulatory and non-coding RNA",
"synonyms": [
"lncRNA",
"Small ncRNA",
"Small interfering RNA",
"Small nuclear RNA",
"siRNA",
"ncRNA",
"snRNA",
"snoRNA",
"Long non-coding RNA",
"Functional RNA",
"piwi-interacting RNA",
"piRNA",
"Long ncRNA",
"microRNA",
"miRNA",
"Small nucleolar RNA",
"Small and long non-coding RNAs",
"Non-coding RNA",
"Small non-coding RNA",
"Regulatory RNA"
],
"description": "Non-coding or functional RNA sequences, including regulatory RNA sequences, ribosomal RNA (rRNA) and transfer RNA (tRNA)."
},
{
"id": 25,
"uri": "http://edamontology.org/topic_3125",
"label": "DNA binding sites",
"synonyms": [
"Matrix-attachment region",
"Ribosome binding sites",
"Scaffold-attachment region",
"Matrix/scaffold attachment region",
"Nucleosome exclusion sequences",
"Restriction sites"
],
"description": "Nucleic acids binding to some other molecule."
},
{
"id": 122,
"uri": "http://edamontology.org/topic_3360",
"label": "Biomarkers",
"synonyms": [
"Diagnostic markers"
],
"description": "Objective indicators of biological state often used to assess health, and determinate treatment."
},
{
"id": 9,
"uri": "http://edamontology.org/topic_0637",
"label": "Taxonomy",
"synonyms": null,
"description": "Organism classification, identification and naming."
},
{
"id": 70,
"uri": "http://edamontology.org/topic_0623",
"label": "Gene and protein families",
"synonyms": [
"Gene system",
"Gene families",
"Gene family",
"Protein sequence classification",
"Protein families",
"Genes, gene family or system"
],
"description": "Particular gene(s), gene family or other gene group or system and their encoded proteins.Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group."
},
{
"id": 2,
"uri": "http://edamontology.org/topic_3519",
"label": "PCR experiment",
"synonyms": [
"Polymerase chain reaction",
"Real Time Quantitative PCR",
"RT-qPCR",
"Quantitative PCR"
],
"description": "PCR experiments, e.g. quantitative real-time PCR."
},
{
"id": 48,
"uri": "http://edamontology.org/topic_3298",
"label": "Phenomics",
"synonyms": null,
"description": "Phenomes, or the study of the change in phenotype (the physical and biochemical traits of organisms) in response to genetic and environmental factors."
},
{
"id": 86,
"uri": "http://edamontology.org/topic_0780",
"label": "Plant biology",
"synonyms": [
"Plant",
"Plant physiology",
"Plant anatomy",
"Plant ecology",
"Plant genetics",
"Botany",
"Plant science",
"Plants",
"Plant cell biology"
],
"description": "Plants, e.g. information on a specific plant genome including molecular sequences, genes and annotation."
},
{
"id": 111,
"uri": "http://edamontology.org/topic_0121",
"label": "Proteomics",
"synonyms": [
"Peptide identification",
"Quantitative proteomics",
"MS-based targeted proteomics",
"Targeted proteomics",
"Metaproteomics",
"MS-based untargeted proteomics",
"Discovery proteomics",
"Top-down proteomics",
"Protein and peptide identification",
"Bottom-up proteomics"
],
"description": "Protein and peptide identification, especially in the study of whole proteomes of organisms."
},
{
"id": 24,
"uri": "http://edamontology.org/topic_0128",
"label": "Protein interactions",
"synonyms": [
"Protein interaction networks",
"Protein-ligand interactions",
"Protein-nucleic acid interactions",
"Protein-DNA interactions",
"Protein-DNA interaction",
"Protein interaction map",
"Protein-RNA interaction",
"Protein-RNA interactions",
"Protein interactome",
"Protein-protein interactions"
],
"description": "Protein-protein, protein-DNA/RNA and protein-ligand interactions, including analysis of known interactions and prediction of putative interactions."
},
{
"id": 113,
"uri": "http://edamontology.org/topic_2814",
"label": "Protein structure analysis",
"synonyms": [
"Protein tertiary structure",
"Protein structure"
],
"description": "Protein secondary or tertiary structural data and/or associated annotation."
}
]
}