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{
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"next": null,
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"id": 68,
"uri": "http://edamontology.org/topic_0194",
"label": "Phylogenomics",
"synonyms": null,
"description": "The integrated study of evolutionary relationships and whole genome data, for example, in the analysis of species trees, horizontal gene transfer and evolutionary reconstruction."
},
{
"id": 107,
"uri": "http://edamontology.org/topic_3372",
"label": "Software engineering",
"synonyms": [
"Computer programming",
"Algorithms",
"Software development",
"Data structures",
"Programming languages"
],
"description": "The process that leads from an original formulation of a computing problem to executable programs."
},
{
"id": 57,
"uri": "http://edamontology.org/topic_3064",
"label": "Developmental biology",
"synonyms": [
"Development"
],
"description": "How organisms grow and develop."
},
{
"id": 86,
"uri": "http://edamontology.org/topic_0780",
"label": "Plant biology",
"synonyms": [
"Plant",
"Plant physiology",
"Plant anatomy",
"Plant ecology",
"Plant genetics",
"Botany",
"Plant science",
"Plants",
"Plant cell biology"
],
"description": "Plants, e.g. information on a specific plant genome including molecular sequences, genes and annotation."
},
{
"id": 24,
"uri": "http://edamontology.org/topic_0128",
"label": "Protein interactions",
"synonyms": [
"Protein interaction networks",
"Protein-ligand interactions",
"Protein-nucleic acid interactions",
"Protein-DNA interactions",
"Protein-DNA interaction",
"Protein interaction map",
"Protein-RNA interaction",
"Protein-RNA interactions",
"Protein interactome",
"Protein-protein interactions"
],
"description": "Protein-protein, protein-DNA/RNA and protein-ligand interactions, including analysis of known interactions and prediction of putative interactions."
},
{
"id": 87,
"uri": "http://edamontology.org/topic_3071",
"label": "Biological databases",
"synonyms": [
"Data management",
"Databases and information systems",
"Information systems"
],
"description": "The development and use of architectures, policies, practices and procedures for management of data."
},
{
"id": 88,
"uri": "http://edamontology.org/topic_0091",
"label": "Bioinformatics",
"synonyms": null,
"description": "The archival, curation, processing and analysis of complex biological data."
},
{
"id": 55,
"uri": "http://edamontology.org/topic_0089",
"label": "Ontology and terminology",
"synonyms": [
"Upper ontology",
"Terminology",
"Ontology",
"Ontologies",
"Ontology relations",
"Applied ontology"
],
"description": "The conceptualisation, categorisation and nomenclature (naming) of entities or phenomena within biology or bioinformatics. This includes formal ontologies, controlled vocabularies, structured glossary, symbols and terminology or other related resource."
},
{
"id": 85,
"uri": "http://edamontology.org/topic_0610",
"label": "Ecology",
"synonyms": [
"Ecological informatics",
"Ecoinformatics",
"Ecosystem science",
"Computational ecology"
],
"description": "The ecological and environmental sciences and especially the application of information technology (ecoinformatics)."
},
{
"id": 51,
"uri": "http://edamontology.org/topic_3308",
"label": "Transcriptomics",
"synonyms": [
"Transcriptome",
"Comparative transcriptomics",
"Metatranscriptomics"
],
"description": "The analysis of transcriptomes, or a set of all the RNA molecules in a specific cell, tissue etc."
},
{
"id": 77,
"uri": "http://edamontology.org/topic_0602",
"label": "Molecular interactions, pathways and networks",
"synonyms": [
"Networks",
"Gene regulatory networks",
"Interactome",
"Molecular interactions",
"Disease pathways",
"Biological pathways",
"Signaling pathways",
"Pathways",
"Environmental information processing pathways",
"Cellular process pathways",
"Genetic information processing pathways",
"Signal transduction pathways",
"Biological models",
"Metabolic pathways",
"Biological networks",
"Interactions"
],
"description": "Molecular interactions, biological pathways, networks and other models."
},
{
"id": 12,
"uri": "http://edamontology.org/topic_0102",
"label": "Mapping",
"synonyms": [
"Linkage",
"Synteny",
"Genetic linkage",
"Linkage mapping"
],
"description": "The mapping of complete (typically nucleotide) sequences. Mapping (in the sense of short read alignment, or more generally, just alignment) has application in RNA-Seq analysis (mapping of transcriptomics reads), variant discovery (e.g. mapping of exome capture), and re-sequencing (mapping of WGS reads)."
},
{
"id": 14,
"uri": "http://edamontology.org/topic_2269",
"label": "Statistics and probability",
"synonyms": [
"Biostatistics",
"Multivariate statistics",
"Bayesian methods",
"Gaussian processes",
"Probability",
"Markov processes",
"Probabilistic graphical model",
"Inferential statistics",
"Descriptive statistics",
"Statistics"
],
"description": "The application of statistical methods to biological problems."
},
{
"id": 65,
"uri": "http://edamontology.org/topic_0749",
"label": "Transcription factors and regulatory sites",
"synonyms": [
"Attenuators",
"Transcription factors",
"GC signals",
"Terminators",
"-10 signals",
"TFBS",
"Isochores",
"-35 signals",
"Promoters",
"Enhancers",
"Transcriptional regulatory sites",
"TATA signals",
"CCAAT box",
"Transcription factor binding sites",
"CAAT signals",
"CAT box",
"CpG islands"
],
"description": "Proteins that bind to DNA and control transcription of DNA to mRNA (transcription factors) and also transcriptional regulatory sites, elements and regions (such as promoters, enhancers, silencers and boundary elements / insulators) in nucleotide sequences."
},
{
"id": 70,
"uri": "http://edamontology.org/topic_0623",
"label": "Gene and protein families",
"synonyms": [
"Gene system",
"Gene families",
"Gene family",
"Protein sequence classification",
"Protein families",
"Genes, gene family or system"
],
"description": "Particular gene(s), gene family or other gene group or system and their encoded proteins.Primarily the classification of proteins (from sequence or structural data) into clusters, groups, families etc., curation of a particular protein or protein family, or any other proteins that have been classified as members of a common group."
},
{
"id": 84,
"uri": "http://edamontology.org/topic_3810",
"label": "Agricultural science",
"synonyms": [
"",
"Plant pathology",
"Animal nutrition",
"Agricultural biotechnology",
"Horticulture",
"Animal husbandry",
"Agricultural economics",
"Phytomedicine",
"Food process engineering",
"Plant breeding",
"Animal breeding",
"Farming systems research",
"Plant nutrition",
"Food security",
"Soil science",
"Plant cultivation"
],
"description": "Multidisciplinary study, research and development within the field of agriculture."
}
]
}