{"count":233,"next":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=100&ordering=-source_repository","previous":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=60&ordering=-source_repository","results":[{"id":58,"name":"Crispi","description":"A CRISPR Interactive database.","homepage":"http://crispi.genouest.org/","biotoolsID":"crispi","biotoolsCURIE":"biotools:crispi","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0160"],"primary_publication":["10.1093/bioinformatics/btp586"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest platform","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://genoweb1.irisa.fr/Serveur-GPO/outils/repeatsAnalysis/CRISPR/help/crispri.pdf","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:06:25.068541Z","teams":[],"source_repository":null},{"id":112,"name":"CRISPRCas","description":"Suite of web applications for analysing Clustered Regularly Interspaced Short Palindromic Repeats.","homepage":"https://crisprcas.i2bc.paris-saclay.fr/","biotoolsID":"CRISPRCas","biotoolsCURIE":"biotools:CRISPRCas","tool_type":["Suite"],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_0080"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2020-02-07T06:24:26Z","teams":[],"source_repository":null},{"id":275,"name":"IMGT 3Dstructure-DB","description":"IMGT/3Dstructure-DB is the IMGT® database for 3D structures of immunoglobulins (IG) or antibodies, T cell receptors (TR), major histocompatibility (MH) proteins, related proteins of the immune system (RPI) and fusion proteins for immune applications (FPIA).\nAnnotation is based on the IMGT-ONTOLOGY concepts.","homepage":"http://www.imgt.org/3Dstructure-DB/","biotoolsID":"imgt_3dstructure","biotoolsCURIE":"biotools:imgt_3dstructure","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3930","http://edamontology.org/topic_3948","http://edamontology.org/topic_0154","http://edamontology.org/topic_0621","http://edamontology.org/topic_0804"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Marie-Paule Lefranc","email":"marie-paule.lefranc@igh.cnrs.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Patrice Duroux","email":"patrice.duroux@igh.cnrs.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":[],"name":"Sofia Kossida","email":"sofia.kossida@igh.cnrs.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null}],"tool_licence":null,"documentation":"http://www.imgt.org/3Dstructure-DB/doc/IMGT3DstructureDBHelp.shtml","maturity":"Mature","cost":"Free of charge (with restrictions)","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T14:00:15.256998Z","teams":["IMGT"],"source_repository":null},{"id":59,"name":"KBDOCK","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":117,"name":"AuReMe","description":"A unified workspace built around a Python package PADMet (Python library for hAndling metaData of METabolism), to house the reconstruction of genome-scale metabolic models.","homepage":"http://aureme.genouest.org","biotoolsID":"aureme","biotoolsCURIE":"biotools:aureme","tool_type":["Command-line tool","Workbench","Workflow"],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_2259"],"primary_publication":["10.1371/journal.pcbi.1006146"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":"anne.siegel@inria.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"GPL-3.0","documentation":"http://aureme.genouest.org/aureme.html","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T14:00:31.744031Z","teams":["GenOuest"],"source_repository":null},{"id":36,"name":"Banana Genome Hub","description":"A Next-Generation Information System for Musa genomics","homepage":"https://banana-genome-hub.southgreen.fr/","biotoolsID":"Banana_Genome_Hub","biotoolsCURIE":"biotools:Banana_Genome_Hub","tool_type":["Database portal"],"collection":["Genome Hub","elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_0797","http://edamontology.org/topic_0621","http://edamontology.org/topic_0622","http://edamontology.org/topic_3308","http://edamontology.org/topic_3810"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":["Developer"],"name":"Gaëtan Droc","email":"gaetan.droc@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0003-1849-1269","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Mathieu Rouard","email":"m.rouard@cgiar.org","url":null,"orcidid":"https://orcid.org/0000-0003-1849-1269","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Bioversity International","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":[],"name":"ANR","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null},{"type_role":["Maintainer"],"name":"CIRAD","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":"GPL-2.0","documentation":"https://banana-genome-hub.southgreen.fr/documentation","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T20:59:38.690746Z","teams":["South Green"],"source_repository":null},{"id":150,"name":"BioMAJ","description":"BioMAJ is a workflow engine dedicated to data synchronization and processing. The Software automates the update cycle and the supervision of the locally mirrored databank repository.","homepage":"http://biomaj.genouest.org/","biotoolsID":"biomaj","biotoolsCURIE":"biotools:biomaj","tool_type":["Web application","Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3071"],"primary_publication":["10.1093/bioinformatics/btn325"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest platform","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Olivier Sallou","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":"AGPL-3.0","documentation":"http://biomaj.readthedocs.io/en/latest/","maturity":"Mature","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T16:17:07.096336Z","teams":["GenOuest"],"source_repository":null},{"id":169,"name":"BIONJ","description":"This software is well suited for distances estimated from DNA or protein sequences. It has better topological accuracy than NJ in all evolutionary conditions; its superiority becomes important when the substitution rates are high and varying among lineages.","homepage":"http://www.atgc-montpellier.fr/bionj/","biotoolsID":"bionj","biotoolsCURIE":"biotools:bionj","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3299","http://edamontology.org/topic_0084","http://edamontology.org/topic_3293","http://edamontology.org/topic_0654"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Eric RIVALS","email":"Eric.Rivals@lirmm.fr","url":"http://www.lirmm.fr/~gascuel/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://www.atgc-montpellier.fr/bionj/paper.php","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T15:15:50.001899Z","teams":["ATGC"],"source_repository":null},{"id":47,"name":"BYKdb","description":"Bacterial protein tYrosine Kinase database (BYKdb). Bacterial tyrosine-kinases share no resemblance with their eukaryotic counterparts and they have been unified in a new protein family named BY-kinases. However, BY-kinase sequence annotations in primary databases remain incomplete. This prompted us to develop a specialized database of computer-annotated BY-kinase sequences.","homepage":"http://bykdb.ibcp.fr/BYKdb/","biotoolsID":"bykdb","biotoolsCURIE":"biotools:bykdb","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0080","http://edamontology.org/topic_0078","http://edamontology.org/topic_0623"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Contact form","email":null,"url":"https://bykdb.ibcp.fr/BYKdb/BYKdbContact","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://bykdb.ibcp.fr/BYKdb/BYKdbHelp","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T15:08:37.507577Z","teams":[],"source_repository":null},{"id":181,"name":"CARNAC","description":"Server which predicts conserved secondary structure elements of homologous RNAs.  The input of a set of RNA sequences are not required to be previously aligned.","homepage":"http://bioinfo.lifl.fr/carnac","biotoolsID":"carnac","biotoolsCURIE":"biotools:carnac","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0097","http://edamontology.org/topic_0659","http://edamontology.org/topic_0099","http://edamontology.org/topic_0781","http://edamontology.org/topic_0082"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Carnac team","email":"carnac@univ-lille1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://bioinfo.lifl.fr/carnac/help.php","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T14:52:06.002489Z","teams":["Bilille"],"source_repository":null},{"id":103,"name":"Ciona robusta Anatomy and Development Ontology","description":"The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.","homepage":"https://www.aniseed.fr/aniseed/anatomy/find_devstage","biotoolsID":"Ciona_robusta_Anatomy_and_Development_Ontology","biotoolsCURIE":"biotools:Ciona_robusta_Anatomy_and_Development_Ontology","tool_type":["Ontology"],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_3064"],"primary_publication":["10.1101/gr.108175.110","10.1093/nar/gkv966"],"operating_system":[],"tool_credit":[],"tool_licence":"Freeware","documentation":null,"maturity":"Legacy","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2023-09-25T13:07:23.980491Z","teams":[],"source_repository":null},{"id":120,"name":"Cocoa Genome Hub","description":"The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.","homepage":"https://cocoa-genome-hub.southgreen.fr/","biotoolsID":"Cocoa_Genome_Hub","biotoolsCURIE":"biotools:Cocoa_Genome_Hub","tool_type":["Database portal"],"collection":["Genome Hub","elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_0203","http://edamontology.org/topic_0621","http://edamontology.org/topic_3308","http://edamontology.org/topic_3810"],"primary_publication":["10.1186/s12864-017-4120-9"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":"Argout","email":"xavier.argout@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0002-0100-5511","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Droc","email":"gaetan.droc@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0003-1849-1269","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Lanaud","email":"claire.lanaud@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0001-6411-7310","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer"],"name":"CIRAD","email":null,"url":"https://www.cirad.fr","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":[],"name":"ANR","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null}],"tool_licence":"GPL-2.0","documentation":"http://api.tripal.info/api/tripal/3.x","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T14:00:43.154205Z","teams":["South Green"],"source_repository":null},{"id":4,"name":"Coffee Genome Hub","description":"The Coffee Genome Hub is an integrated web-based database providing centralized access to coffee community genomics, genetics and breeding data and analysis tools to facilitate basic, translational and applied research in coffee.","homepage":"https://coffee-genome-hub.southgreen.fr/","biotoolsID":"Coffee_Genome_Hub","biotoolsCURIE":"biotools:Coffee_Genome_Hub","tool_type":["Database portal"],"collection":["Genome Hub"],"scientific_topics":["http://edamontology.org/topic_0780","http://edamontology.org/topic_0091"],"primary_publication":["10.1093/nar/gku1108"],"operating_system":[],"tool_credit":[{"type_role":["Developer"],"name":"Alexis Dereeper","email":"alexis.dereeper@ird.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":["Developer"],"name":"Gaetan Droc","email":"droc@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0003-1849-1269","gridid":null,"typeEntity":null,"note":null}],"tool_licence":"GPL-2.0","documentation":"http://coffee-genome.org/documentation","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T20:58:58.975865Z","teams":["South Green"],"source_repository":null},{"id":166,"name":"CRAC","description":"CRAC is a mapping software specialized for RNA-Seq data. It detects mutations, indels, splice or fusion junctions in each single read.","homepage":"http://crac.gforge.inria.fr","biotoolsID":"crac","biotoolsCURIE":"biotools:crac","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0114","http://edamontology.org/topic_3170","http://edamontology.org/topic_3320"],"primary_publication":["10.1186/gb-2013-14-3-r30"],"operating_system":["Linux","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"For question regarding the software","email":"crac-bugs@lists.gforge.inria.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"For questions, comments, remarks on the algorithm or the article","email":"crac-article@lists.gforge.inria.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"CECILL-2.0","documentation":"http://crac.gforge.inria.fr/documentation/","maturity":"Mature","cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2018-12-10T12:58:59Z","teams":["ATGC","Bilille"],"source_repository":null},{"id":123,"name":"DEPIB","description":"Analysis pipeline using Snakemake for RNAseq analysis in order to find differentially expressed genes.","homepage":"https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline","biotoolsID":"DEPIB","biotoolsCURIE":"biotools:DEPIB","tool_type":["Workflow"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3308"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":["Provider","Support"],"name":"BiRD bioinformatics facility","email":"pf-bird@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr","orcidid":null,"gridid":null,"typeEntity":"Division","note":null},{"type_role":["Provider"],"name":"BiRD","email":"pf-bird@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr","orcidid":null,"gridid":null,"typeEntity":"Division","note":null},{"type_role":["Primary contact","Developer","Support"],"name":"Eric Charpentier","email":"eric.charpentier@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Audrey Bihouée","email":"audrey.bihouee@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/","orcidid":"https://orcid.org/0000-0002-8689-2083","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Erwan Delage","email":"erwan.delage@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer","Contributor"],"name":"Damien Vintache","email":"Damien.Vintache@univ-nantes.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Solenne Dumont","email":"solenne.dumont@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/","orcidid":"https://orcid.org/0000-0003-3237-7382","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":"Emerging","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-24T14:40:03.286943Z","teams":["BiRD"],"source_repository":null},{"id":277,"name":"IMGT mAb-DB","description":"IMGT/mAb-DB is the IMGT® database for monoclonal antibodies (mAb) or immunoglobulins (IG), fusion proteins for immune applications (FPIA) and composite proteins for clinical applications (CPCA).\nIMGT/mAb-DB provides links to IMGT/2Dstructure-DB and IMGT/3Dstructure-DB.","homepage":"http://www.imgt.org/mAb-DB/","biotoolsID":"IMGT_mAb-DB","biotoolsCURIE":"biotools:IMGT_mAb-DB","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3400","http://edamontology.org/topic_3930","http://edamontology.org/topic_3948","http://edamontology.org/topic_0804"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":[],"name":"Marie-Paule Lefranc","email":"marie-paule.Lefranc@igh.cnrs.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":[],"name":"Sofia Kossida","email":"sofia.Kossida@igh.cnrs.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Patrice Duroux","email":"patrice.duroux@igh.cnrs.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://www.imgt.org/mAb-DB/doc","maturity":"Mature","cost":"Free of charge (with restrictions)","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T13:59:20.810745Z","teams":["IMGT"],"source_repository":null},{"id":278,"name":"metabocloud","description":"Web portal to gather tools to improve metabolomic annotations through API microservices based on a cloud infrastructure.","homepage":"https://metabocloud.mesocentre.uca.fr/","biotoolsID":"metabocloud","biotoolsCURIE":"biotools:metabocloud","tool_type":["Bioinformatics portal"],"collection":["metabolomic platform"],"scientific_topics":["http://edamontology.org/topic_3172"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Contributor"],"name":"Franck Giacomoni","email":"franck.giacomoni@inrae.fr","url":null,"orcidid":"https://orcid.org/0000-0001-6063-4214","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer","Provider"],"name":"Nadia Goué","email":"nadia.goue@uca.fr","url":null,"orcidid":"https://orcid.org/0000-0003-2750-1473","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer","Contributor"],"name":"Nils Paulhe","email":"nils.paulhe@inrae.fr","url":null,"orcidid":"https://orcid.org/0000-0003-4550-1258","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer","Provider"],"name":"Thomas Bellembois","email":"thomas.bellembois@uca.fr","url":null,"orcidid":"https://orcid.org/0009-0001-6661-0691","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Faustine Souc","email":"faustine.souc@inrae.fr","url":null,"orcidid":"https://orcid.org/0009-0004-9172-0632","gridid":null,"typeEntity":null,"note":null},{"type_role":["Provider"],"name":"Antoine Mahul","email":"antoine.mahul@uca.fr","url":null,"orcidid":"https://orcid.org/0000-0002-9729-1603","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":"Emerging","cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-01-22T10:11:29.320362Z","teams":["AuBi"],"source_repository":null},{"id":57,"name":"AnnotQTL","description":"Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.","homepage":"http://annotqtl.genouest.org/","biotoolsID":"annotqtl","biotoolsCURIE":"biotools:annotqtl","tool_type":["Database portal","Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0085"],"primary_publication":["10.1093/nar/gkr361"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://annotqtl.genouest.org/tutorial","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:06:26.428724Z","teams":[],"source_repository":null},{"id":54,"name":"AphidBase","description":"An aphid genome database.","homepage":"http://aphidbase.com/","biotoolsID":"aphidbase","biotoolsCURIE":"biotools:aphidbase","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0622"],"primary_publication":["10.1111/j.1365-2583.2009.00930.x"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"BIPAA platform","email":"bipaa@rennes.inra.fr","url":"http://www.inra.fr/bipaa","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://bipaa.genouest.org/is/aphidbase/","maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-10T12:58:49Z","teams":["GenOuest"],"source_repository":null},{"id":127,"name":"DiNAMO","description":"The DiNAMO software implements an exhaustive algorithm to detect over-represented IUPAC motifs in a set of DNA sequences.","homepage":"https://github.com/bonsai-team/DiNAMO","biotoolsID":"dinamo","biotoolsCURIE":"biotools:dinamo","tool_type":["Command-line tool","Library"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0160","http://edamontology.org/topic_3169","http://edamontology.org/topic_3168"],"primary_publication":["10.1186/s12859-018-2215-1"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Chadi Saad","email":"chadi.saad@univ-lille1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"GPL-3.0","documentation":"https://github.com/bonsai-team/DiNAMO/blob/master/README.md","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T14:31:44.889611Z","teams":["Bilille"],"source_repository":null}]}