{"count":233,"next":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=60&ordering=source_repository","previous":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=20&ordering=source_repository","results":[{"id":52,"name":"Gametogenesis and reproductive tissue expression","description":"High-throughput expression data relevant for germline development and fertility across species.","homepage":"http://www.germonline.org/","biotoolsID":"germonline","biotoolsCURIE":"biotools:germonline","tool_type":["Database portal"],"collection":["DRCAT"],"scientific_topics":["http://edamontology.org/topic_0623"],"primary_publication":["10.1093/database/baq030"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":"michael.primig@inserm.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Documentor"],"name":"DRCAT","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Project","note":null}],"tool_licence":null,"documentation":"http://www.germonline.org/gol_4_userguide.pdf","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T20:35:55.972418Z","teams":["GenOuest"],"source_repository":"http://www.germonline.org/gol_4_userguide.pdf"},{"id":35,"name":"OryGenesDB","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":34,"name":"OryzaTagLine","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":26,"name":"ppRNome Browser","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":56,"name":"CyanoLyase","description":"Manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences available in public databases.","homepage":"http://cyanolyase.genouest.org/","biotoolsID":"cyanolyase","biotoolsCURIE":"biotools:cyanolyase","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0623"],"primary_publication":["10.1093/nar/gks1091"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://cyanolyase.genouest.org/help","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:06:21.263559Z","teams":[],"source_repository":null},{"id":260,"name":"CulebrONT","description":"CulebrONT is a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes.","homepage":"https://forge.ird.fr/diade/culebront_pipeline","biotoolsID":"culebront","biotoolsCURIE":"biotools:culebront","tool_type":["Workflow"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_0621","http://edamontology.org/topic_0196"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2022-01-10T14:00:06.343876Z","teams":["South Green"],"source_repository":null},{"id":25,"name":"secreton","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":15,"name":"Locus Specific Databases UMD","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":190,"name":"CRISPRFinder","description":"Detects this family of direct repeats found in the DNA of many bacteria and archaea.","homepage":"https://crisprcas.i2bc.paris-saclay.fr/CrisprCasFinder/Index","biotoolsID":"crisprfinder","biotoolsCURIE":"biotools:crisprfinder","tool_type":["Database portal","Web application"],"collection":["CRISPR"],"scientific_topics":["http://edamontology.org/topic_2885","http://edamontology.org/topic_0157","http://edamontology.org/topic_0203","http://edamontology.org/topic_0621","http://edamontology.org/topic_0749"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Marie Touchon","email":"mtouchon@pasteur.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"Unlicense","documentation":null,"maturity":"Mature","cost":"Free of charge","unique_visits":480,"citations":null,"annual_visits":2273,"last_update":"2024-11-24T21:05:00.924973Z","teams":["EBIO"],"source_repository":null},{"id":254,"name":"MOGAMUN","description":"A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks.\n\nMOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., highly connected subnetworks with an overall deregulation) in MUltiplex biological Networks. For a detailed description of MOGAMUN check out the preprint https://www.biorxiv.org/content/10.1101/2020.05.25.114215v1. All the expression datasets and networks that we used to obtain the results reported in our preprint are available in the GitHub repository https://github.com/elvanov/MOGAMUN-data.","homepage":"https://github.com/elvanov/MOGAMUN","biotoolsID":"mogamun","biotoolsCURIE":"biotools:mogamun","tool_type":["Library"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0121","http://edamontology.org/topic_0203","http://edamontology.org/topic_3170","http://edamontology.org/topic_0634","http://edamontology.org/topic_0602"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":[],"name":null,"email":"anais.baudot@univ-amu.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2021-02-26T09:22:38Z","teams":["Systems Biomedicine"],"source_repository":null},{"id":24,"name":"Conjdb","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":239,"name":"ACDtool","description":"Web-server for the generic analysis of large data sets of counts.","homepage":"https://www.igs.cnrs-mrs.fr/acdtool/","biotoolsID":"acdtool","biotoolsCURIE":"biotools:acdtool","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_2269"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-12-10T09:25:24.490675Z","teams":["PACA-Bioinfo"],"source_repository":null},{"id":149,"name":"PepPSy","description":"A gene expression-based prioritization system to help investigators to determine in which human tissues they should look for an unseen protein.","homepage":"http://peppsy.genouest.org","biotoolsID":"peppsy","biotoolsCURIE":"biotools:peppsy","tool_type":["Web application"],"collection":["Proteomics"],"scientific_topics":["http://edamontology.org/topic_0121","http://edamontology.org/topic_3308"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Developer"],"name":"Thomas Darde","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Paula P. Duek","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":null,"email":"frederic.chalmel@univ-rennes1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Lydie Lane","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Olivier Sallou","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer"],"name":"Frédéric Chalmel","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Olivier Collin","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://peppsy.genouest.org/help","maturity":"Mature","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T14:12:40.921423Z","teams":["GenOuest"],"source_repository":null},{"id":21,"name":"HOGENOM","description":"It allows selection of sets of homologous genes among species, and visualisation of multiple alignments and phylogenetic trees. It is useful for comparative sequence analysis, phylogeny, molecular evolution studies and to get a view of what is known about a peculiar gene family.","homepage":"http://pbil.univ-lyon1.fr/databases/hogenom3.html","biotoolsID":"hogenom","biotoolsCURIE":"biotools:hogenom","tool_type":["Database portal","Web service"],"collection":["DRCAT"],"scientific_topics":["http://edamontology.org/topic_0797","http://edamontology.org/topic_3293","http://edamontology.org/topic_0080","http://edamontology.org/topic_0194","http://edamontology.org/topic_0623"],"primary_publication":["10.1186/1471-2105-10-S6-S3"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Documentor"],"name":"DRCAT","email":null,"url":"http://drcat.sourceforge.net/","orcidid":null,"gridid":null,"typeEntity":"Project","note":null},{"type_role":["Documentor"],"name":"BioCatalogue","email":null,"url":"https://www.biocatalogue.org","orcidid":null,"gridid":null,"typeEntity":"Project","note":null},{"type_role":["Primary contact"],"name":null,"email":"simon.penel@univ-lyon1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":null,"email":null,"url":"http://prodom.prabi.fr/prodom/current/html/home.php","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://doua.prabi.fr/databases/hogenom/home.php?contents=methods","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T14:20:45.218653Z","teams":[],"source_repository":null},{"id":287,"name":"MiBiOmics","description":"An interactive web application for multi-omics data exploration and integration.\n\nA web application for multi-omics analysis.","homepage":"https://shiny-bird.univ-nantes.fr/app/Mibiomics","biotoolsID":"mibiomics","biotoolsCURIE":"biotools:mibiomics","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_3360","http://edamontology.org/topic_0602"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":[],"name":"Johanna Zoppi","email":"johanna.zoppi@univ-nantes.fr","url":null,"orcidid":"https://orcid.org/0000-0002-8688-8201","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Michel Neunlist","email":"Michel.Neunlist@univ-nantes.fr","url":null,"orcidid":"https://orcid.org/0000-0003-1892-5071","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"BiRD bioinformatics facility","email":"pf-bird@univ-nantes.fr","url":"http://pf-bird.univ-nantes.fr/","orcidid":null,"gridid":null,"typeEntity":"Division","note":null},{"type_role":[],"name":"LS2N","email":null,"url":"http://www.ls2n.fr/","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":["Primary contact"],"name":"Samuel Chaffron","email":"samuel.chaffron@univ-nantes.fr","url":null,"orcidid":"https://orcid.org/0000-0001-5903-617X","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"TENS","email":null,"url":"https://www.inserm-tens.com/","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2021-11-08T21:27:18.126015Z","teams":["BiRD"],"source_repository":null},{"id":261,"name":"Panache","description":"Panache (Pangenome analyzer with chromosomal exploration) is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show aresence/absence information of pangenomic blocks of sequence or genes in a browser-like display.","homepage":"http://github.com/SouthGreenPlatform/panache","biotoolsID":"panache","biotoolsCURIE":"biotools:panache","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0621","http://edamontology.org/topic_0654"],"primary_publication":["10.1093/bioinformatics/btab688"],"operating_system":[],"tool_credit":[{"type_role":["Primary contact"],"name":"Mathieu Rouard","email":"m.rouard@cgiar.org","url":null,"orcidid":"https://orcid.org/0000-0003-0284-1885","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Éloi Durant","email":"eloi.durant@ird.fr","url":null,"orcidid":"https://orcid.org/0000-0002-2734-4327","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2021-11-01T10:14:54.337479Z","teams":["South Green"],"source_repository":null},{"id":67,"name":"PlantRNA","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":["BiGEst"],"source_repository":null},{"id":66,"name":"CYPedia ","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":70,"name":"GnplS","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":["URGI"],"source_repository":null},{"id":23,"name":"Multi-Genome Genolist","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null}]}