{"count":233,"next":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=60&ordering=cost","previous":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=20&ordering=cost","results":[{"id":103,"name":"Ciona robusta Anatomy and Development Ontology","description":"The first ontology describing the anatomy and the development of Ciona robusta, based on the Hotta developmental table.","homepage":"https://www.aniseed.fr/aniseed/anatomy/find_devstage","biotoolsID":"Ciona_robusta_Anatomy_and_Development_Ontology","biotoolsCURIE":"biotools:Ciona_robusta_Anatomy_and_Development_Ontology","tool_type":["Ontology"],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_3064"],"primary_publication":["10.1101/gr.108175.110","10.1093/nar/gkv966"],"operating_system":[],"tool_credit":[],"tool_licence":"Freeware","documentation":null,"maturity":"Legacy","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2023-09-25T13:07:23.980491Z","teams":[],"source_repository":null},{"id":120,"name":"Cocoa Genome Hub","description":"The Cocoa Genome Hub is an integrated web-based database providing centralized access to the cocoa reference genome sequences and genomic resources.","homepage":"https://cocoa-genome-hub.southgreen.fr/","biotoolsID":"Cocoa_Genome_Hub","biotoolsCURIE":"biotools:Cocoa_Genome_Hub","tool_type":["Database portal"],"collection":["Genome Hub","elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_0203","http://edamontology.org/topic_0621","http://edamontology.org/topic_3308","http://edamontology.org/topic_3810"],"primary_publication":["10.1186/s12864-017-4120-9"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":"Argout","email":"xavier.argout@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0002-0100-5511","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Droc","email":"gaetan.droc@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0003-1849-1269","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Lanaud","email":"claire.lanaud@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0001-6411-7310","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer"],"name":"CIRAD","email":null,"url":"https://www.cirad.fr","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":[],"name":"ANR","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null}],"tool_licence":"GPL-2.0","documentation":"http://api.tripal.info/api/tripal/3.x","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T14:00:43.154205Z","teams":["South Green"],"source_repository":null},{"id":282,"name":"easy16S","description":"Easy16S is designed to facilitate the exploration, visualization, and analysis of microbiome data.","homepage":"https://easy16s.migale.inrae.fr/","biotoolsID":"easy16s","biotoolsCURIE":"biotools:easy16s","tool_type":[],"collection":[],"scientific_topics":["http://edamontology.org/topic_3174"],"primary_publication":["10.21105/joss.06704"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":[],"name":"Cédric Midoux","email":"cedric.midoux@inrae.fr","url":null,"orcidid":"https://orcid.org/0000-0002-7964-0929","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://easy16s.migale.inrae.fr/","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-12-11T14:36:21.065324Z","teams":["MIGALE"],"source_repository":"https://doi.org/10.57745/ZN1HXQ"},{"id":57,"name":"AnnotQTL","description":"Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.","homepage":"http://annotqtl.genouest.org/","biotoolsID":"annotqtl","biotoolsCURIE":"biotools:annotqtl","tool_type":["Database portal","Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0085"],"primary_publication":["10.1093/nar/gkr361"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://annotqtl.genouest.org/tutorial","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:06:26.428724Z","teams":[],"source_repository":null},{"id":54,"name":"AphidBase","description":"An aphid genome database.","homepage":"http://aphidbase.com/","biotoolsID":"aphidbase","biotoolsCURIE":"biotools:aphidbase","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0622"],"primary_publication":["10.1111/j.1365-2583.2009.00930.x"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"BIPAA platform","email":"bipaa@rennes.inra.fr","url":"http://www.inra.fr/bipaa","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://bipaa.genouest.org/is/aphidbase/","maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-10T12:58:49Z","teams":["GenOuest"],"source_repository":null},{"id":85,"name":"ARIA","description":"A software for automated NOE assignment and NMR structure calculation.","homepage":"http://aria.pasteur.fr/","biotoolsID":"aria","biotoolsCURIE":"biotools:aria","tool_type":["Command-line tool"],"collection":["elixir-fr-sdp-2019","Institut Pasteur","FR"],"scientific_topics":["http://edamontology.org/topic_1317","http://edamontology.org/topic_0176","http://edamontology.org/topic_3306","http://edamontology.org/topic_3332","http://edamontology.org/topic_2275","http://edamontology.org/topic_0081","http://edamontology.org/topic_0078","http://edamontology.org/topic_0593"],"primary_publication":["10.1093/bioinformatics/btl589"],"operating_system":["Linux","Mac"],"tool_credit":[{"type_role":["Provider"],"name":"Institut Pasteur","email":null,"url":"http://aria.pasteur.fr/contact-info","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":["Primary contact"],"name":"Michael Nilges","email":"michael.nilges@pasteur.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Benjamin Bardiaux","email":"benjamin.bardiaux@pasteur.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"MIT","documentation":"http://aria.pasteur.fr/documentation","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T20:37:34.670261Z","teams":[],"source_repository":null},{"id":87,"name":"Genetic and Genomic Information System (GnpIS)","description":"GnpIS is an integrative and multi-species information system dedicated to plants, including forest trees. It handles various types of data, focusing on genetic resources and phenomics. It allows researchers from the Plant community to access and cross-reference genetic data (accessions, phenotypes, polymorphisms, markers and QTLs) and genomic data (sequences, physical maps, genome annotations) for species of agronomic and forestry interest.\nAccessible via a public web portal, GnpIS enables different types of data to be managed, browsed and retrieved via specialized search tools and web services.\nGnpIS is used by the French National Research Institute for Agriculture, Food and Environment (INRAE) and its partners in major national and international projects.","homepage":"https://urgi.versailles.inrae.fr/gnpis","biotoolsID":"gnpis","biotoolsCURIE":"biotools:gnpis","tool_type":["Database portal","Web application"],"collection":["elixir-fr-sdp-2019","Animal and Crop Genomics"],"scientific_topics":["http://edamontology.org/topic_0622","http://edamontology.org/topic_0625","http://edamontology.org/topic_3053","http://edamontology.org/topic_0780"],"primary_publication":["10.1093/database/bat058","10.1007/978-1-4939-6658-5_5","10.3835/plantgenome2015.06.0038"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"URGI helpdesk","email":"urgi-support@inrae.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Division","note":null},{"type_role":["Primary contact"],"name":null,"email":"urgi-contact@versailles.inra.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"CC-BY-4.0","documentation":"https://urgi.versailles.inrae.fr/Data-Services/Data-Access/GnpIS","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-12-19T17:15:16.754031Z","teams":["URGI"],"source_repository":"https://forge.inrae.fr/urgi/is/gnpis"},{"id":160,"name":"Frog","description":"Frog2 (Free Online Drug Conformation 2) is a service aimed at generating 3D conformations for small molecules starting from their 1D, 2D or 3D descriptions (smiles, sdf or mol2 input formats). Frog2 improves upon Frog1 by embedding new energy minimization and ring generation capacities.","homepage":"https://mobyle2.rpbs.univ-paris-diderot.fr/cgi-bin/portal.py#forms::Frog2","biotoolsID":"frog2","biotoolsCURIE":"biotools:frog2","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0154","http://edamontology.org/topic_2275"],"primary_publication":["10.1093/nar/gkq325"],"operating_system":[],"tool_credit":[{"type_role":["Primary contact"],"name":"Frederic Guyon","email":"frederic.guyon@univ-paris-diderot.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Maria A. Miteva","email":"maria.mitev@inserm.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Pierre Tufféry","email":"pierre.tuffery@univ-paris-diderot.fr","url":null,"orcidid":"https://orcid.org/0000-0003-1033-9895","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"Freeware","documentation":"https://bioserv.rpbs.univ-paris-diderot.fr/services/Frog2/","maturity":"Mature","cost":"Free of charge","unique_visits":960,"citations":null,"annual_visits":6400,"last_update":"2026-03-19T13:27:15.551602Z","teams":["RPBS"],"source_repository":null},{"id":149,"name":"PepPSy","description":"A gene expression-based prioritization system to help investigators to determine in which human tissues they should look for an unseen protein.","homepage":"http://peppsy.genouest.org","biotoolsID":"peppsy","biotoolsCURIE":"biotools:peppsy","tool_type":["Web application"],"collection":["Proteomics"],"scientific_topics":["http://edamontology.org/topic_0121","http://edamontology.org/topic_3308"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Developer"],"name":"Thomas Darde","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Paula P. Duek","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":null,"email":"frederic.chalmel@univ-rennes1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Lydie Lane","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Olivier Sallou","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Maintainer"],"name":"Frédéric Chalmel","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Olivier Collin","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://peppsy.genouest.org/help","maturity":"Mature","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T14:12:40.921423Z","teams":["GenOuest"],"source_repository":null},{"id":239,"name":"ACDtool","description":"Web-server for the generic analysis of large data sets of counts.","homepage":"https://www.igs.cnrs-mrs.fr/acdtool/","biotoolsID":"acdtool","biotoolsCURIE":"biotools:acdtool","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_2269"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-12-10T09:25:24.490675Z","teams":["PACA-Bioinfo"],"source_repository":null},{"id":190,"name":"CRISPRFinder","description":"Detects this family of direct repeats found in the DNA of many bacteria and archaea.","homepage":"https://crisprcas.i2bc.paris-saclay.fr/CrisprCasFinder/Index","biotoolsID":"crisprfinder","biotoolsCURIE":"biotools:crisprfinder","tool_type":["Database portal","Web application"],"collection":["CRISPR"],"scientific_topics":["http://edamontology.org/topic_2885","http://edamontology.org/topic_0157","http://edamontology.org/topic_0203","http://edamontology.org/topic_0621","http://edamontology.org/topic_0749"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Marie Touchon","email":"mtouchon@pasteur.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"Unlicense","documentation":null,"maturity":"Mature","cost":"Free of charge","unique_visits":480,"citations":null,"annual_visits":2273,"last_update":"2024-11-24T21:05:00.924973Z","teams":["EBIO"],"source_repository":null},{"id":138,"name":"SARTools","description":"R package dedicated to the differential analysis of RNA-seq data. It provides tools to generate descriptive and diagnostic graphs, to run the differential analysis with one of the well known DESeq2 or edgeR packages and to export the results into easily readable tab-delimited files. It also facilitates the generation of a HTML report which displays all the figures produced, explains the statistical methods and gives the results of the differential analysis.","homepage":"https://github.com/PF2-pasteur-fr/SARTools","biotoolsID":"sartools","biotoolsCURIE":"biotools:sartools","tool_type":["Command-line tool"],"collection":["SARTools"],"scientific_topics":["http://edamontology.org/topic_3308","http://edamontology.org/topic_2269"],"primary_publication":["10.1371/journal.pone.0157022"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Provider"],"name":"Institut Pasteur","email":null,"url":"https://research.pasteur.fr","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":["Contributor"],"name":"France Génomique","email":null,"url":"https://www.france-genomique.org","orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null},{"type_role":[],"name":"C3BI","email":null,"url":"https://research.pasteur.fr/en/center/c3bi/","orcidid":null,"gridid":null,"typeEntity":"Division","note":null},{"type_role":["Developer","Primary contact"],"name":"Marie-Agnès Dillies","email":"marie-agnes.dillies@pasteur.fr","url":"https://research.pasteur.fr/fr/member/marie-agnes-dillies/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Support","Primary contact"],"name":"Jean-Yves Coppée","email":"jean-yves.coppee@pasteur.fr","url":"https://research.pasteur.fr/fr/member/jean-yves-coppee/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer","Primary contact"],"name":"Hugo Varet","email":"hugo.varet@pasteur.fr","url":"https://research.pasteur.fr/fr/member/hugo-varet/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"Bioinformatics and Biostatistics Hub","email":null,"url":"https://research.pasteur.fr/en/team/bioinformatics-and-biostatistics-hub/","orcidid":null,"gridid":null,"typeEntity":"Division","note":null}],"tool_licence":"GPL-2.0","documentation":"https://github.com/PF2-pasteur-fr/SARTools","maturity":"Mature","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2021-04-17T15:12:05Z","teams":["Pasteur HUB"],"source_repository":"https://github.com/PF2-pasteur-fr/SARTools"},{"id":262,"name":"GeMo","description":"A web-based platform for the visualization and curation of genome ancestry mosaics.","homepage":"https://gemo.southgreen.fr/","biotoolsID":"gemo","biotoolsCURIE":"biotools:gemo","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3500","http://edamontology.org/topic_0625","http://edamontology.org/topic_0654","http://edamontology.org/topic_0780","http://edamontology.org/topic_3810"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":[],"name":"Marilyne Summo","email":"marilyne.summo@cirad.fr","url":null,"orcidid":"https://orcid.org/0000-0002-9308-974X","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Mathieu Rouard","email":"m.rouard@cgiar.org","url":null,"orcidid":"https://orcid.org/0000-0003-0284-1885","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Gaëtan Droc","email":null,"url":null,"orcidid":"https://orcid.org/0000-0003-1849-1269","gridid":null,"typeEntity":null,"note":null},{"type_role":[],"name":"Guillaume Martin","email":null,"url":null,"orcidid":"https://orcid.org/0000-0002-1801-7500","gridid":null,"typeEntity":null,"note":null}],"tool_licence":null,"documentation":"https://gemo.readthedocs.io","maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T15:31:16.942311Z","teams":["South Green"],"source_repository":"https://github.com/SouthGreenPlatform/GeMo"},{"id":288,"name":"MAGNETO","description":"An automated workflow for genome-resolved metagenomics","homepage":"https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto","biotoolsID":"magneto","biotoolsCURIE":"biotools:magneto","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_3050","http://edamontology.org/topic_3697","http://edamontology.org/topic_3174","http://edamontology.org/topic_0196"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":[],"name":"Samuel Chaffron","email":"samuel.chaffron@ls2n.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Benjamin Churcheward","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":[],"name":"Audrey Bihouée","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":[],"name":"Guillaume Fertin","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":[],"name":"Hugo Lefeuvre","email":"hugo.lefeuvre@univ-nantes.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null}],"tool_licence":null,"documentation":"https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto/-/wikis/home","maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-02-24T16:29:20.503951Z","teams":["BiRD"],"source_repository":"https://gitlab.univ-nantes.fr/bird_pipeline_registry/magneto"},{"id":197,"name":"JASS","description":"software package that handles the computation of the joint statistics over sets of selected GWAS results, and the interactive exploration of the results through a web interface.","homepage":"http://statistical-genetics.pages.pasteur.fr/jass/","biotoolsID":"jass","biotoolsCURIE":"biotools:jass","tool_type":["Web service","Web application","Command-line tool"],"collection":["Institut Pasteur"],"scientific_topics":["http://edamontology.org/topic_3517","http://edamontology.org/topic_3053","http://edamontology.org/topic_2269"],"primary_publication":["10.1093/nargab/lqaa003","10.1101/714832v1"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Developer"],"name":"Hanna Julienne","email":"hanna.julienne@pasteur.fr","url":"https://research.pasteur.fr/fr/member/hanna-julienne/","orcidid":"https://orcid.org/0000-0001-8214-9412","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Vincent Guillemot","email":"vincent.guillemot@pasteur.fr","url":"https://research.pasteur.fr/fr/member/vincent-guillemot/","orcidid":"https://orcid.org/0000-0002-7421-0655","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Pierre Lechat","email":"pierre.lechat@pasteur.fr","url":"https://research.pasteur.fr/fr/member/pierre-lechat/","orcidid":"https://orcid.org/0000-0003-1050-5582","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Carla Lasry","email":null,"url":"https://research.pasteur.fr/fr/member/carla-lasry/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Chunzi Yao","email":"chunzi.yao@pasteur.fr","url":"https://research.pasteur.fr/fr/member/chunzi-yao/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Vincent Laville","email":"vincent.laville@pasteur.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"Bjarni Vilhjalmsson","email":null,"url":"https://pure.au.dk/portal/en/persons/bjarni-johann-vilhjlmsson(35c047ab-0899-4434-91bb-121e4878ec76).html","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Hervé Ménager","email":"herve.menager@pasteur.fr","url":"https://research.pasteur.fr/fr/search/herve%20menager","orcidid":"https://orcid.org/0000-0002-7552-1009","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Hugues Aschard","email":"hugues.aschard@pasteur.fr","url":"https://research.pasteur.fr/fr/member/hugues-aschard/","orcidid":"http://orcid.org/0000-0002-7554-6783","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://statistical-genetics.pages.pasteur.fr/jass/","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T14:46:08.475046Z","teams":[],"source_repository":"https://gitlab.pasteur.fr/statistical-genetics/jass"},{"id":53,"name":"LepidoDB","description":"Genomics of two major lepidopteran pests.","homepage":"http://www.inra.fr/lepidodb","biotoolsID":"lepidodb","biotoolsCURIE":"biotools:lepidodb","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0622"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"BIPAA platform","email":"bipaa@rennes.inra.fr","url":"http://www.inra.fr/bipaa","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://bipaa.genouest.org/is/lepidodb/","maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-11T18:57:25Z","teams":["GenOuest"],"source_repository":null},{"id":56,"name":"CyanoLyase","description":"Manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences available in public databases.","homepage":"http://cyanolyase.genouest.org/","biotoolsID":"cyanolyase","biotoolsCURIE":"biotools:cyanolyase","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0623"],"primary_publication":["10.1093/nar/gks1091"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://cyanolyase.genouest.org/help","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:06:21.263559Z","teams":[],"source_repository":null},{"id":263,"name":"TrEMOLO","description":"Accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.","homepage":"https://github.com/DrosophilaGenomeEvolution/TrEMOLO","biotoolsID":"tremolo","biotoolsCURIE":"biotools:tremolo","tool_type":["Command-line tool","Workflow"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3175","http://edamontology.org/topic_0798","http://edamontology.org/topic_0196","http://edamontology.org/topic_3168"],"primary_publication":["10.1186/s13059-023-02911-2"],"operating_system":["Linux"],"tool_credit":[{"type_role":[],"name":"Anna-Sophie Fiston-Lavier","email":"anna-sophie.fiston-lavier@umontpellier.fr","url":null,"orcidid":"https://orcid.org/0000-0002-7306-6532","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Séverine Chambeyron","email":"severine.chambeyron@igh.cnrs.fr","url":null,"orcidid":"https://orcid.org/0000-0003-2775-6556","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T14:41:13.039486Z","teams":["South Green"],"source_repository":"https://dataverse.ird.fr/dataverse/tremolo_data"},{"id":99,"name":"Genomicus-protists","description":"Genomicus-protists is a genome browser that enables users to navigate in protists genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time.","homepage":"http://www.genomicus.biologie.ens.fr/genomicus-protists/","biotoolsID":"Genomicus-protists","biotoolsCURIE":"biotools:Genomicus-protists","tool_type":["Database portal","Web application"],"collection":["elixir-fr-sdp-2019","GENOMICUS"],"scientific_topics":["http://edamontology.org/topic_3943","http://edamontology.org/topic_3299","http://edamontology.org/topic_0797","http://edamontology.org/topic_0621","http://edamontology.org/topic_0622","http://edamontology.org/topic_0194","http://edamontology.org/topic_0623"],"primary_publication":["10.1093/nar/gks1156"],"operating_system":[],"tool_credit":[{"type_role":["Support"],"name":null,"email":"genomicus-web@ens.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":["Primary contact"],"name":"Hugues Roest Crollius","email":"hrc@ens.fr","url":"http://www.ibens.ens.fr/?rubrique43","orcidid":"http://orcid.org/0000-0002-8209-173X","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Alexandra Louis","email":"alouis@biologie.ens.fr","url":"http://www.ibens.ens.fr/spip.php?article182","orcidid":"http://orcid.org/0000-0001-7032-5650","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2020-06-16T10:55:27Z","teams":["PB-IBENS"],"source_repository":null},{"id":68,"name":"NORINE","description":"NORINE is a platform that includes a database of nonribosomal peptides together with tools for their analysis.","homepage":"http://norine.univ-lille.fr/norine/","biotoolsID":"NORINE","biotoolsCURIE":"biotools:NORINE","tool_type":["Database portal"],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_3332","http://edamontology.org/topic_3301","http://edamontology.org/topic_3307","http://edamontology.org/topic_0078","http://edamontology.org/topic_3071"],"primary_publication":["10.1093/nar/gkz1000"],"operating_system":[],"tool_credit":[{"type_role":[],"name":"Norine team","email":"norine@univ-lille.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null}],"tool_licence":"CC-BY-NC-SA-4.0","documentation":null,"maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2022-07-21T13:25:21.706482Z","teams":["Bilille"],"source_repository":null}]}