{"count":233,"next":null,"previous":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=200&ordering=-last_update","results":[{"id":19,"name":"PhylOPDb","description":"Phylogenetic Oligonucleotide Probe Database. Provides a convivial and easy-to-use web interface to browse both regular and explorative 16S rRNA-targeted probes.","homepage":"http://g2im.u-clermont1.fr/phylopdb/help.php","biotoolsID":"phylopdb","biotoolsCURIE":"biotools:phylopdb","tool_type":["Database portal","Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0632","http://edamontology.org/topic_3518","http://edamontology.org/topic_3293"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":"pierre.peyret@udamail.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://g2im.u-clermont1.fr/phylopdb/help.php","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-10T12:58:58Z","teams":[],"source_repository":null},{"id":183,"name":"SHOW","description":"Enables self-learning of HMM on a set of sequences, sequence segmentation based on the Baum-Welch or the Viterbi algorithms,and sequence simulation under a given HMM. Allows the user to specify any highly structured model and also to process large sets of sequences. Successfully used in diverse tasks such as DNA segmentation in homogeneous segments, bacterial gene prediction and human splice sites detection.","homepage":"http://genome.jouy.inra.fr/ssb/SHOW/","biotoolsID":"show","biotoolsCURIE":"biotools:show","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3320","http://edamontology.org/topic_0160","http://edamontology.org/topic_0080","http://edamontology.org/topic_0654","http://edamontology.org/topic_3372"],"primary_publication":[],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":null,"url":"https://www.ssbgroup.fr/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://genome.jouy.inra.fr/ssb/SHOW/show_doc.pdf","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2018-12-10T12:58:58Z","teams":["MIGALE"],"source_repository":null},{"id":154,"name":"CompPhy","description":"Web-based collaborative platform for comparing phylogenies.","homepage":"http://www.atgc-montpellier.fr/compphy/","biotoolsID":"compphy","biotoolsCURIE":"biotools:compphy","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3056","http://edamontology.org/topic_0797","http://edamontology.org/topic_3293"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Contact form","email":null,"url":"http://www.atgc-montpellier.fr/compphy/?p=contact","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://www.atgc-montpellier.fr/compphy/?p=userguide","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2018-12-10T12:58:57Z","teams":["ATGC"],"source_repository":null},{"id":141,"name":"DroPNet","description":"DroPNet is a webserver for generating and analyzing Drosophila protein-protein interaction networks. Input data is a list of genes from an experiment such as RNAi screen.","homepage":"http://dropnet.isima.fr","biotoolsID":"dropnet","biotoolsCURIE":"biotools:dropnet","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3523","http://edamontology.org/topic_3678","http://edamontology.org/topic_3957","http://edamontology.org/topic_0128","http://edamontology.org/topic_0602"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"RENAUD Yoan","email":"renaud@isima.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://dropnet.gred-clermont.fr/DroPNet_project/UserManual.pdf","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":72000,"last_update":"2018-12-10T12:58:56Z","teams":["AuBi"],"source_repository":null},{"id":9,"name":"remap","description":"Display restriction enzyme binding sites in a nucleotide sequence.","homepage":"http://emboss.open-bio.org/rel/rel6/apps/remap.html","biotoolsID":"remap","biotoolsCURIE":"biotools:remap","tool_type":["Database portal","Command-line tool"],"collection":["EMBOSS"],"scientific_topics":["http://edamontology.org/topic_3125"],"primary_publication":["10.1016/S0168-9525(00)02024-2"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Contributor"],"name":"EMBOSS Contributors","email":null,"url":"http://emboss.open-bio.org/html/use/pr01s01.html","orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":["Provider"],"name":"EMBL-EBI","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":["Provider"],"name":"EMBOSS","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null},{"type_role":["Support"],"name":"EMBOSS","email":"emboss@emboss.open-bio.org","url":null,"orcidid":null,"gridid":null,"typeEntity":null,"note":null},{"type_role":["Primary contact"],"name":null,"email":"emboss@emboss.open-bio.org","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Contributor"],"name":"UK MRC","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null},{"type_role":["Contributor"],"name":"Wellcome Trust","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null},{"type_role":["Contributor"],"name":"UK BBSRC","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Funding agency","note":null},{"type_role":["Primary contact"],"name":null,"email":"emboss-bug@emboss.open-bio.org","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"GPL-3.0","documentation":"http://emboss.open-bio.org/rel/rel6/apps/remap.html","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-10T12:58:55Z","teams":[],"source_repository":"http://emboss.open-bio.org/html/adm/ch01s01.html"},{"id":171,"name":"RNAbrowse","description":"The tool permits sequencing facilities and, even small, bioinformatic teams to give a user-friendly access to RNA-Seq de novo results, helping biologists to analyse and extract meaningful information from their data.","homepage":"https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo","biotoolsID":"rnabrowse","biotoolsCURIE":"biotools:rnabrowse","tool_type":["Web application","Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3170","http://edamontology.org/topic_0099","http://edamontology.org/topic_0219","http://edamontology.org/topic_3168"],"primary_publication":[],"operating_system":["Linux","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":null,"url":"https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo","maturity":null,"cost":null,"unique_visits":2250,"citations":null,"annual_visits":4720,"last_update":"2018-12-10T12:58:51Z","teams":[],"source_repository":null},{"id":170,"name":"RNAspace","description":"A platform which aims at providing an integrated environment for non-coding RNA annotation. The platform allows running in an integrated environment a variety of ncRNA gene finders, to explore results with dedicated tools for comparison, visualization and edition of putative ncRNAs and to export them in various formats.","homepage":"http://www.rnaspace.org/","biotoolsID":"rnaspace","biotoolsCURIE":"biotools:rnaspace","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0659","http://edamontology.org/topic_0099","http://edamontology.org/topic_0219"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":"Marie-Josee.Cros@inra.fr","url":"http://rnaspace.org/partners","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://www.rnaspace.org/help/#help1","maturity":null,"cost":null,"unique_visits":14318,"citations":null,"annual_visits":17558,"last_update":"2018-12-10T12:58:50Z","teams":[],"source_repository":null},{"id":54,"name":"AphidBase","description":"An aphid genome database.","homepage":"http://aphidbase.com/","biotoolsID":"aphidbase","biotoolsCURIE":"biotools:aphidbase","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0622"],"primary_publication":["10.1111/j.1365-2583.2009.00930.x"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"BIPAA platform","email":"bipaa@rennes.inra.fr","url":"http://www.inra.fr/bipaa","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://bipaa.genouest.org/is/aphidbase/","maturity":null,"cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-10T12:58:49Z","teams":["GenOuest"],"source_repository":null},{"id":134,"name":"Protomata","description":"Motif search and discovery in protein sequences.","homepage":"http://tools.genouest.org/tools/protomata/","biotoolsID":"protomata","biotoolsCURIE":"biotools:protomata","tool_type":["Web application","Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0080"],"primary_publication":["10.1007/11564096_50"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":"CECILL-2.0","documentation":"http://tools.genouest.org/tools/protomata/help","maturity":"Mature","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2018-12-10T12:58:49Z","teams":["GenOuest"],"source_repository":null},{"id":207,"name":"Commet","description":"This software provides a global similarity overview between all datasets of a large metagenomic project.","homepage":"https://colibread.inria.fr/software/commet/","biotoolsID":"commet","biotoolsCURIE":"biotools:commet","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0080"],"primary_publication":["10.1109/BIBM.2014.6999135"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":"Pierre Peterlongo","email":"pierre.peterlongo@inria.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"https://github.com/pierrepeterlongo/commet/blob/master/doc/commet_user_guide.pdf","maturity":"Emerging","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2018-12-10T12:58:49Z","teams":["GenOuest"],"source_repository":null},{"id":128,"name":"Tedna","description":"A lightweight de novo transposable element assembler. It assembles the transposable elements directly from the raw reads.","homepage":"http://urgi.versailles.inra.fr/Tools/Tedna","biotoolsID":"tedna","biotoolsCURIE":"biotools:tedna","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0080","http://edamontology.org/topic_0654","http://edamontology.org/topic_0196"],"primary_publication":[],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":"urgi-contact@versailles.inra.fr","url":"https://urgi.versailles.inra.fr/","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://urgi.versailles.inra.fr/content/download/2962/25436/file/tedna_doc.pdf","maturity":null,"cost":null,"unique_visits":557,"citations":null,"annual_visits":1872,"last_update":"2018-12-10T12:58:49Z","teams":[],"source_repository":null},{"id":173,"name":"Tango","description":"A computer algorithm for prediction of aggregating regions in unfolded polypeptide chains. The model used here, is designed to predict cross-beta aggregation in peptides and denatured proteins and consists of a phase-space encompassing the random coil and 4 possible structural states: beta-turn, alpha-helix, beta-sheet aggregation and alpha-helical aggregation.","homepage":"http://tango.crg.es/","biotoolsID":"tango","biotoolsCURIE":"biotools:tango","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3510","http://edamontology.org/topic_0081","http://edamontology.org/topic_0078"],"primary_publication":[],"operating_system":["Linux","Windows"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":null,"url":"http://tango.crg.es/support.jsp","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://tango.crg.es/Tango_Handbook.pdf","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2018-12-10T12:58:45Z","teams":["CBiB"],"source_repository":null},{"id":175,"name":"Logol","description":"Pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic).","homepage":"http://logol.genouest.org","biotoolsID":"logol","biotoolsCURIE":"biotools:logol","tool_type":["Web application","Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0160"],"primary_publication":["10.1007/978-3-319-09192-1_4"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":"CECILL-2.0","documentation":"http://training.genouest.org/claroline/claroline/learnPath/learningPathList.php?cidReset=true&cidReq=LOGOL","maturity":"Emerging","cost":"Free of charge","unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2018-12-10T12:58:34Z","teams":["GenOuest"],"source_repository":null}]}