{"count":233,"next":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=200&ordering=tool_licence","previous":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=160&ordering=tool_licence","results":[{"id":20,"name":"PRIAM","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":23,"name":"Multi-Genome Genolist","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":24,"name":"Conjdb","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":25,"name":"secreton","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":26,"name":"ppRNome Browser","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":27,"name":"eDystrophin","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":["GenOuest"],"source_repository":null},{"id":28,"name":"dbSTAR","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":29,"name":"Staphylococcal regulatory RNAs","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":30,"name":"MouseCre","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":33,"name":"TropGene","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":260,"name":"CulebrONT","description":"CulebrONT is a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes.","homepage":"https://github.com/SouthGreenPlatform/CulebrONT_pipeline","biotoolsID":"culebront","biotoolsCURIE":"biotools:culebront","tool_type":["Workflow"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0769","http://edamontology.org/topic_0621","http://edamontology.org/topic_0196"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2022-01-10T14:00:06.343876Z","teams":["South Green"],"source_repository":null},{"id":56,"name":"CyanoLyase","description":"Manually curated sequence and amino acid motif database gathering all the different phycobilin lyases and related protein sequences available in public databases.","homepage":"http://cyanolyase.genouest.org/","biotoolsID":"cyanolyase","biotoolsCURIE":"biotools:cyanolyase","tool_type":["Database portal"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0623"],"primary_publication":["10.1093/nar/gks1091"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"GenOuest","email":"support@genouest.org","url":"http://www.genouest.org","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Provider"],"name":"GenOuest","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"http://cyanolyase.genouest.org/help","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:06:21.263559Z","teams":[],"source_repository":null},{"id":282,"name":"easy16S","description":"Easy16S is designed to facilitate the exploration, visualization, and analysis of microbiome data.","homepage":"https://easy16s.migale.inrae.fr/","biotoolsID":"easy16s","biotoolsCURIE":"biotools:easy16s","tool_type":[],"collection":[],"scientific_topics":["http://edamontology.org/topic_3174"],"primary_publication":["10.21105/joss.06704"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":[],"name":"Cédric Midoux","email":"cedric.midoux@inrae.fr","url":null,"orcidid":"https://orcid.org/0000-0002-7964-0929","gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://easy16s.migale.inrae.fr/","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2025-12-11T14:36:21.065324Z","teams":["MIGALE"],"source_repository":"https://doi.org/10.57745/ZN1HXQ"},{"id":114,"name":"GalaxEast","description":"GalaxEast aims at providing a large range of bioinformatics tools for the analysis of various types of Omics data. It supports reproducible computational research by providing an environment for performing and recording bioinformatics analyses.","homepage":"http://www.galaxeast.fr/","biotoolsID":"GalaxEast","biotoolsCURIE":"biotools:GalaxEast","tool_type":["Workbench"],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_3391"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2020-01-24T09:54:41Z","teams":[],"source_repository":null},{"id":21,"name":"HOGENOM","description":"It allows selection of sets of homologous genes among species, and visualisation of multiple alignments and phylogenetic trees. It is useful for comparative sequence analysis, phylogeny, molecular evolution studies and to get a view of what is known about a peculiar gene family.","homepage":"http://pbil.univ-lyon1.fr/databases/hogenom3.html","biotoolsID":"hogenom","biotoolsCURIE":"biotools:hogenom","tool_type":["Database portal","Web service"],"collection":["DRCAT"],"scientific_topics":["http://edamontology.org/topic_0797","http://edamontology.org/topic_3293","http://edamontology.org/topic_0080","http://edamontology.org/topic_0194","http://edamontology.org/topic_0623"],"primary_publication":["10.1186/1471-2105-10-S6-S3"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":"simon.penel@univ-lyon1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Documentor"],"name":"DRCAT","email":null,"url":"http://drcat.sourceforge.net/","orcidid":null,"gridid":null,"typeEntity":"Project","note":null},{"type_role":["Documentor"],"name":"BioCatalogue","email":null,"url":"https://www.biocatalogue.org","orcidid":null,"gridid":null,"typeEntity":"Project","note":null},{"type_role":["Primary contact"],"name":null,"email":null,"url":"http://prodom.prabi.fr/prodom/current/html/home.php","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://doua.prabi.fr/databases/hogenom/home.php?contents=methods","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T14:20:45.218653Z","teams":[],"source_repository":null},{"id":254,"name":"MOGAMUN","description":"A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks.\n\nMOGAMUN is a Multi Objective Genetic Algorithm to find active modules (i.e., highly connected subnetworks with an overall deregulation) in MUltiplex biological Networks. For a detailed description of MOGAMUN check out the preprint https://www.biorxiv.org/content/10.1101/2020.05.25.114215v1. All the expression datasets and networks that we used to obtain the results reported in our preprint are available in the GitHub repository https://github.com/elvanov/MOGAMUN-data.","homepage":"https://github.com/elvanov/MOGAMUN","biotoolsID":"mogamun","biotoolsCURIE":"biotools:mogamun","tool_type":["Library"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0121","http://edamontology.org/topic_3170","http://edamontology.org/topic_0203","http://edamontology.org/topic_0634","http://edamontology.org/topic_0602"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":[],"name":null,"email":"anais.baudot@univ-amu.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2021-02-26T09:22:38Z","teams":["Systems Biomedicine"],"source_repository":null},{"id":286,"name":"pyBRAvo","description":"From a list of genes, pyBRAvo produces upstream regulation or signaling networks. pyBRAvo internally leverages the BioPAX ontolgy, the PathwayCommons knowledge graph, and the SPARQL semantic web query language. pyBRAvo can be used through either a Jupyter notebook, or a command line interface.","homepage":"https://github.com/pyBRAvo/pyBRAvo","biotoolsID":"pybravo","biotoolsCURIE":"biotools:pybravo","tool_type":["Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_2259","http://edamontology.org/topic_0602"],"primary_publication":["10.1093/database/baaa113"],"operating_system":[],"tool_credit":[{"type_role":["Primary contact","Developer"],"name":"Alban Gaignard","email":"alban.gaignard@univ-nantes.fr","url":"http://albangaignard.github.io/","orcidid":"https://orcid.org/0000-0002-3597-8557","gridid":null,"typeEntity":"Person","note":null},{"type_role":["Developer"],"name":"Marie Lefebvre","email":"marie.lefebvre@inrae.fr","url":"https://mariebvr.github.io/marieBvr/","orcidid":"https://orcid.org/0000-0002-3093-5873","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Maxime Folschette","email":"maxime.folschette@centralelille.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Jeremy Bourdon","email":null,"url":null,"orcidid":"https://orcid.org/0000-0001-6674-8626","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"Carito Guziolowski","email":null,"url":null,"orcidid":"https://orcid.org/0000-0001-5192-0745","gridid":null,"typeEntity":"Person","note":null},{"type_role":[],"name":"SyMeTRIC","email":null,"url":"http://symetric.univ-nantes.fr/doku.php","orcidid":null,"gridid":null,"typeEntity":"Project","note":null},{"type_role":["Provider","Support"],"name":"BiRD bioinformatics facility","email":"pf-bird@univ-nantes.fr","url":"https://pf-bird.univ-nantes.fr","orcidid":null,"gridid":null,"typeEntity":"Division","note":null}],"tool_licence":null,"documentation":"https://github.com/pyBRAvo/pyBRAvo","maturity":"Mature","cost":"Free of charge","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2022-05-31T14:22:33.309326Z","teams":["BiRD"],"source_repository":"https://github.com/pyBRAvo/pyBRAvo"},{"id":171,"name":"RNAbrowse","description":"The tool permits sequencing facilities and, even small, bioinformatic teams to give a user-friendly access to RNA-Seq de novo results, helping biologists to analyse and extract meaningful information from their data.","homepage":"https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo","biotoolsID":"rnabrowse","biotoolsCURIE":"biotools:rnabrowse","tool_type":["Web application","Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_3170","http://edamontology.org/topic_0099","http://edamontology.org/topic_0219","http://edamontology.org/topic_3168"],"primary_publication":[],"operating_system":["Linux","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":null,"url":"https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://mulcyber.toulouse.inra.fr/plugins/mediawiki/wiki/ngspipelines/index.php/RNA-seq_denovo","maturity":null,"cost":null,"unique_visits":2250,"citations":null,"annual_visits":4720,"last_update":"2018-12-10T12:58:51Z","teams":[],"source_repository":null},{"id":34,"name":"OryzaTagLine","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":35,"name":"OryGenesDB","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null}]}