{"count":233,"next":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=120&ordering=-cost","previous":"https://catalogue.france-bioinformatique.fr/api/tool/?format=json&limit=20&offset=80&ordering=-cost","results":[{"id":15,"name":"Locus Specific Databases UMD","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":180,"name":"Assemble2","description":"Design your RNA 2D structure interactively and to create and assemble the corresponding RNA 3D modules directly in UCSF Chimera.","homepage":"http://bioinformatics.org/assemble/","biotoolsID":"assemble2","biotoolsCURIE":"biotools:assemble2","tool_type":["Web API"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0097"],"primary_publication":["10.1093/bioinformatics/btq321"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":null,"url":"http://www.bioinformatics.org/assemble/contacts.html","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Documentor"],"name":"BioCatalogue","email":null,"url":"https://www.biocatalogue.org","orcidid":null,"gridid":null,"typeEntity":"Project","note":null}],"tool_licence":null,"documentation":"http://bioinformatics.org/assemble/","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T15:45:38.090886Z","teams":["BiGEst"],"source_repository":null},{"id":136,"name":"AutoGRAPH","description":"Integrated web server for multi-species comparative genomic analysis. It is designed for constructing and visualizing synteny maps between two or three species, determination and display of macrosynteny and microsynteny relationships among species, and for highlighting evolutionary breakpoints.","homepage":"http://autograph.genouest.org/","biotoolsID":"autograph","biotoolsCURIE":"biotools:autograph","tool_type":["Web service"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0797","http://edamontology.org/topic_0654","http://edamontology.org/topic_0102"],"primary_publication":[],"operating_system":[],"tool_credit":[{"type_role":["Primary contact"],"name":"Derrien T","email":"toma.derrien@gmail.com","url":"http://www-recomgen.univ-rennes1.fr/doggy.html","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://autograph.genouest.org/Tutorial.php","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T15:04:29.788401Z","teams":["GenOuest"],"source_repository":null},{"id":188,"name":"SyntTax","description":"A web server linking synteny to prokaryotic taxonomy.","homepage":"http://archaea.u-psud.fr/SyntTax/","biotoolsID":"synttax","biotoolsCURIE":"biotools:synttax","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0204","http://edamontology.org/topic_0637","http://edamontology.org/topic_3053"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Jacques Oberto","email":"jacques.oberto@igmors.u-psud.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"http://archaea.u-psud.fr/SyntTax/SyntTax_Help.html","maturity":null,"cost":null,"unique_visits":1707,"citations":null,"annual_visits":3829,"last_update":"2018-12-10T12:58:58Z","teams":["EBIO"],"source_repository":null},{"id":48,"name":"European Hepatitis C virus database (euHCVdb)","description":"European Hepatitis C virus database.","homepage":"http://euhcvdb.ibcp.fr/euHCVdb/","biotoolsID":"euhcvdb","biotoolsCURIE":"biotools:euhcvdb","tool_type":["Database portal"],"collection":["DRCAT"],"scientific_topics":["http://edamontology.org/topic_0781"],"primary_publication":["10.1093/nar/gkl970"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":null,"email":null,"url":"https://euhcvdb.ibcp.fr/euHCVdb/jsp/sendMail.jsp","orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Documentor"],"name":"DRCAT","email":null,"url":null,"orcidid":null,"gridid":null,"typeEntity":"Project","note":null}],"tool_licence":null,"documentation":"https://euhcvdb.ibcp.fr/euHCVdb/jsp/help.jsp","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-25T16:04:26.299102Z","teams":[],"source_repository":null},{"id":37,"name":"GreenPhyl","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":["South Green"],"source_repository":null},{"id":2,"name":"FatAndMuscleDB","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":40,"name":"BactPepDB","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":43,"name":"MeryB","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":45,"name":"BLC2db","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":249,"name":"FROGS","description":"The user-friendly and Galaxy-supported pipeline FROGS analyses large sets of DNA amplicons sequences accurately and rapidly, essential for microbe community studies.","homepage":"http://frogs.toulouse.inra.fr/","biotoolsID":"frogs","biotoolsCURIE":"biotools:frogs","tool_type":["Command-line tool"],"collection":["FROGS"],"scientific_topics":["http://edamontology.org/topic_3697","http://edamontology.org/topic_3299","http://edamontology.org/topic_3174","http://edamontology.org/topic_0637","http://edamontology.org/topic_3168"],"primary_publication":["10.1093/bioinformatics/btx791","10.1093/bib/bbab318"],"operating_system":["Linux"],"tool_credit":[{"type_role":["Primary contact"],"name":"Géraldine Pascal","email":"geraldine.pascal@inra.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null},{"type_role":["Primary contact"],"name":"Géraldine Pascal","email":"geraldine.pascal@inrae.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":"https://github.com/geraldinepascal/FROGS","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T20:07:18.846597Z","teams":["MIGALE"],"source_repository":"https://github.com/geraldinepascal/FROGS"},{"id":55,"name":"GAG","description":"Generates an NCBI .tbl file of annotations on a genome.","homepage":"https://github.com/genomeannotation/GAG","biotoolsID":"gag","biotoolsCURIE":"biotools:gag","tool_type":["Database portal","Command-line tool"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0077","http://edamontology.org/topic_3673","http://edamontology.org/topic_0622"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Scott M Geib","email":"scott.geib@ars.usda.gov","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"MIT","documentation":"https://github.com/genomeannotation/GAG","maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2024-11-24T20:31:52.130383Z","teams":[],"source_repository":null},{"id":115,"name":"GalaxyCat","description":"An online catalog that lists all the tools available on various Galaxy instances and thus allows through a simple web interface to quickly find on which instances a tool is usable.","homepage":"http://galaxycat.france-bioinformatique.fr/","biotoolsID":"GalaxyCat","biotoolsCURIE":"biotools:GalaxyCat","tool_type":[],"collection":["elixir-fr-sdp-2019"],"scientific_topics":["http://edamontology.org/topic_0091"],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2020-01-24T09:54:19Z","teams":[],"source_repository":null},{"id":46,"name":"HBVdb","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":185,"name":"GPCRautomodel","description":"Allows the user to upload a GPCR sequence, choose a ligand in a library and obtain the 3D structure of the free receptor and ligand-receptor complex.","homepage":"http://genome.jouy.inra.fr/GPCRautomodel","biotoolsID":"gpcrautomodel","biotoolsCURIE":"biotools:gpcrautomodel","tool_type":["Web application"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0078","http://edamontology.org/topic_0082","http://edamontology.org/topic_0128"],"primary_publication":[],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Jean-François Gibrat","email":"jean-francois.gibrat@jouy.inra.fr","url":"http://genome.jouy.inra.fr/GPCRautomdl/cgi-bin/welcome.pl","orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T16:14:23.225464Z","teams":["MIGALE"],"source_repository":null},{"id":280,"name":"Paraload","description":"Paraload is an original utility which ensures job distribution between thousands of processors, according to the type of the data to be analysed.","homepage":"ftp://doua.prabi.fr/pub/logiciel/paraload","biotoolsID":"Paraload","biotoolsCURIE":"biotools:Paraload","tool_type":[],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2019-11-06T12:00:30Z","teams":["PRABI-AMSB"],"source_repository":null},{"id":49,"name":"Arabidopsis chloroplast database (AT_CHLORO)","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":50,"name":"UNIPATHWAY ","description":"","homepage":null,"biotoolsID":"","biotoolsCURIE":"","tool_type":["Database portal"],"collection":[],"scientific_topics":[],"primary_publication":[],"operating_system":[],"tool_credit":[],"tool_licence":null,"documentation":null,"maturity":null,"cost":null,"unique_visits":null,"citations":null,"annual_visits":null,"last_update":null,"teams":[],"source_repository":null},{"id":127,"name":"DiNAMO","description":"The DiNAMO software implements an exhaustive algorithm to detect over-represented IUPAC motifs in a set of DNA sequences.","homepage":"https://github.com/bonsai-team/DiNAMO","biotoolsID":"dinamo","biotoolsCURIE":"biotools:dinamo","tool_type":["Command-line tool","Library"],"collection":[],"scientific_topics":["http://edamontology.org/topic_0160","http://edamontology.org/topic_3169","http://edamontology.org/topic_3168"],"primary_publication":["10.1186/s12859-018-2215-1"],"operating_system":["Linux","Windows","Mac"],"tool_credit":[{"type_role":["Primary contact"],"name":"Chadi Saad","email":"chadi.saad@univ-lille1.fr","url":null,"orcidid":null,"gridid":null,"typeEntity":"Person","note":null}],"tool_licence":"GPL-3.0","documentation":"https://github.com/bonsai-team/DiNAMO/blob/master/README.md","maturity":null,"cost":null,"unique_visits":0,"citations":null,"annual_visits":0,"last_update":"2024-11-25T14:31:44.889611Z","teams":["Bilille"],"source_repository":null},{"id":93,"name":"MicroScope platform","description":"MicroScope is an integrated Web platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. It supports submissions of newly assembled genomes and metagenomes, and also provides analysis services for RNA-seq data. The user interface of MicroScope enables collaborative work in a rich comparative context to improve community-based curation efforts.","homepage":"https://mage.genoscope.cns.fr/microscope/","biotoolsID":"MicroScope_platform","biotoolsCURIE":"biotools:MicroScope_platform","tool_type":["Bioinformatics portal","Web application","Workbench"],"collection":["elixir-fr-sdp-2019","fr"],"scientific_topics":["http://edamontology.org/topic_0085","http://edamontology.org/topic_3301","http://edamontology.org/topic_0797","http://edamontology.org/topic_0621","http://edamontology.org/topic_0219","http://edamontology.org/topic_2259"],"primary_publication":["10.1093/nar/gks1194","10.1093/nar/gkw1101","10.1093/database/bap021","10.1093/nar/gkj406","10.1093/bib/bbx113","10.1093/nar/gkz926"],"operating_system":[],"tool_credit":[{"type_role":["Provider","Developer","Support","Primary contact"],"name":"LABGeM - CEA/Genosocope - UMR8030","email":"labgem@genoscope.cns.fr","url":"https://labgem.genoscope.cns.fr","orcidid":null,"gridid":null,"typeEntity":"Institute","note":null}],"tool_licence":null,"documentation":"https://microscope.readthedocs.io/en/stable/","maturity":"Mature","cost":"Free of charge (with restrictions)","unique_visits":null,"citations":null,"annual_visits":null,"last_update":"2020-06-16T10:55:28Z","teams":["MicroScope"],"source_repository":null}]}