GET /api/tool/?format=api&ordering=maturity
HTTP 200 OK
Allow: GET, POST, HEAD, OPTIONS
Content-Type: application/json
Vary: Accept

{
    "count": 238,
    "next": "https://catalogue.france-bioinformatique.fr/api/tool/?format=api&limit=20&offset=20&ordering=maturity",
    "previous": null,
    "results": [
        {
            "id": 90,
            "name": "FAIDARE",
            "description": "FAIDARE: FAIR Data-finder for Agronomic Research. \nThe purpose of this portal is to facilitate the discoverability of public data on plant biology from a federation of established data repositories.\n\nIt is based on the Breeding API (BrAPI) specifications and facilitates the access to genotype and phenotype datasets for crop and forest plants through an easy to use web interface. It also provides a standard interface that can be accessed programatically through web services.\n\nIt is an extension of the generic DataDiscovery portal, a web portal that allows finding any type of data across several databases through a lightweight keyword based search. FAIDARE offers more detailed search and data retrieval capabilities and it takes advantage of the growing adoption of the BrAPI.",
            "homepage": "https://urgi.versailles.inrae.fr/faidare/",
            "biotoolsID": "faidare",
            "biotoolsCURIE": "biotools:faidare",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0625",
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Support"
                    ],
                    "name": "URGI support",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/faidare/help",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-09-02T05:04:34.812991Z",
            "teams": [
                "URGI"
            ],
            "source_repository": "https://forgemia.inra.fr/urgi-is/faidare"
        },
        {
            "id": 174,
            "name": "Linda",
            "description": "The web application Linda offers a complete tool for entering and managing metadata associated with a phenotyping experiment on plants. It thus makes it possible to intuitively describe experimental related information such as, for example, the experimental design, the growth protocols, the environmental variable measurements, etc. Linda is coupled with a database that stores this information in a structured manneer using oriented graphs. This database uses reference ontologies (e.g., Plant Ontology, Crop Ontology, etc.) and standards dedicated to this type of experiment such as the Minimal Information About Plant Phenotyping Experiment (MIAPPE) standard. Data sharing is facilitated on the one hand by respecting the FAIR principles (Findable Accessible Interoperable Reusable) and oon the other hand, by exporting this metadata relating to the experiment in tabulated formats or formatted for submission in the international databases (ISA-tab).",
            "homepage": "https://services.cbib.u-bordeaux.fr/linda/",
            "biotoolsID": "xeml-lab",
            "biotoolsCURIE": "biotools:xeml-lab",
            "tool_type": [
                "Web application",
                "Desktop application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3292",
                "http://edamontology.org/topic_0219",
                "http://edamontology.org/topic_3053",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0089"
            ],
            "primary_publication": [
                "10.1111/j.1365-3040.2009.01964.x"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "CHen Zhui",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Emmanuel Bouilhol",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Yves Gibon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Cecile Cabasson",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Université de Bordeaux (CGFB)",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Support"
                    ],
                    "name": "Benjamin Dartigues",
                    "email": "benjamin.dartigues@u-bordeaux.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Benjamin Dartigues",
                    "email": "benjamin.dartigues@u-bordeaux.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Primary contact"
                    ],
                    "name": "Benjamin Dartigues",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Macha Nikolski",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Yves Gibon",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Cecile Cabasson",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "UMR 1332 - Biologie du Fruit et Pathologie",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "INRA",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Alexis Groppi",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Centre de Bioinformatique de Bordeaux (CBiB)",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "u-bordeaux.fr",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "MIT",
            "documentation": "https://services.cbib.u-bordeaux.fr/linda",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2022-09-27T14:48:43.394660Z",
            "teams": [
                "CBiB"
            ],
            "source_repository": "https://services.cbib.u-bordeaux.fr/linda/"
        },
        {
            "id": 258,
            "name": "FAIR-Checker",
            "description": "FAIR-Checker is a tool aimed at assessing FAIR principles and empowering data provider to enhance the quality of their digital resources. Data providers and consumers can check how FAIR are web resources. Developers can explore and inspect metadata exposed in web resources.",
            "homepage": "https://fair-checker.france-bioinformatique.fr",
            "biotoolsID": "fair-checker",
            "biotoolsCURIE": "biotools:fair-checker",
            "tool_type": [
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3316",
                "http://edamontology.org/topic_0089"
            ],
            "primary_publication": [
                "10.1186/s13326-023-00289-5"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:45:19.260708Z",
            "teams": [
                "BiRD",
                "IFB Core"
            ],
            "source_repository": null
        },
        {
            "id": 244,
            "name": "NGphylogeny.fr",
            "description": "Free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.",
            "homepage": "https://ngphylogeny.fr/",
            "biotoolsID": "NGphylogeny.fr",
            "biotoolsCURIE": "biotools:NGphylogeny.fr",
            "tool_type": [
                "Bioinformatics portal",
                "Web application",
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/nar/gkz303"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Damien Correia",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Maintainer",
                        "Primary contact"
                    ],
                    "name": "Frédéric Lemoine",
                    "email": "frederic.lemoine@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Fabien Mareuil",
                    "email": "fmareuil@pasteur.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Contributor"
                    ],
                    "name": "Vincent Lefort",
                    "email": "vincent.lefort@lirmm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://ngphylogeny.fr/documentation",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:31.390401Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 255,
            "name": "Kmerator",
            "description": "Kmerator is a prototype tool designed for the prediction of specific k-mers (also called tags) from input sequences, considering a reference genome and an ENSEMBL-like transcriptome. From these specific k-mers, it also outputs their corresponding specific contigs which are sequences of consecutive k-mers (overlapping length between k-mers must be k-1, otherwise, it's a new contig). Kmerator first uses Jellyfish to create 2 requestable indexes from the reference genome and transcriptome, and second, decomposes your input transcript or gene sequences to count the occurences of each k-mer in the genome and transcriptome.",
            "homepage": "https://github.com/Transipedia/kmerator",
            "biotoolsID": "kmerator",
            "biotoolsCURIE": "biotools:kmerator",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3360",
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_0203",
                "http://edamontology.org/topic_3170",
                "http://edamontology.org/topic_3512"
            ],
            "primary_publication": [
                "10.1093/nargab/lqab058"
            ],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Thérèse Commes",
                    "email": "therese.commes@inserm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T16:01:46.602609Z",
            "teams": [
                "Bio2M"
            ],
            "source_repository": null
        },
        {
            "id": 86,
            "name": "BIII (BioImage Informatics Index, biii.eu)",
            "description": "BIII (BioImage Informatics Index, biii.eu) is a registry of software tools, image databases for benchmarking, and training materials for bioimage analysis. Software tools are organized as either a full protocol of analysis (workflow), a specific component to construct a workflow, or a software platform or library (collection). They are described using EDAM-bioimaging. All entries are exposed following FAIR principles and accessible for other usage with ODC-By v1.0 license.",
            "homepage": "https://biii.eu",
            "biotoolsID": "BISE",
            "biotoolsCURIE": "biotools:BISE",
            "tool_type": [
                "Database portal",
                "Bioinformatics portal",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "NEUBIAS"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3298",
                "http://edamontology.org/topic_0769",
                "http://edamontology.org/topic_3382",
                "http://edamontology.org/topic_3063",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Matúš Kalaš",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-1509-4981",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Coordinator of the EDAM-bioimaging ontology development"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Leandro Scholz",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-2411-0429",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Worked on the curation instructions"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Florian Levet",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4009-6225",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Development of Python scripts"
                },
                {
                    "type_role": [
                        "Documentor"
                    ],
                    "name": "Taggers",
                    "email": null,
                    "url": "http://biii.eu/show-taggers",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "People curating tools"
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "NEUBIAS Network of Bioimage Analysts",
                    "email": null,
                    "url": "https://neubias.eu",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Consortium",
                    "note": "COST action having supported the creation and curation of this database"
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Perrine Paul-Gilloteaux",
                    "email": "perrine.paul-gilloteaux@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-4822-165X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Leader of the project"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Kota Miura",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6926-191X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Main technical support and one of the founders of the project"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Chong Zhang",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Co-leader of the developement"
                },
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Alban Gaignard",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-3597-8557",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": "Developed the core ontology (data model) and enabled reuse of the content through W3C standards"
                }
            ],
            "tool_licence": "Other",
            "documentation": "https://github.com/NeuBIAS/bise/wiki",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2021-03-26T15:45:10Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 175,
            "name": "Logol",
            "description": "Pattern matching grammar language and a set of tools to search a pattern in a sequence (nucleic or proteic).",
            "homepage": "http://logol.genouest.org",
            "biotoolsID": "logol",
            "biotoolsCURIE": "biotools:logol",
            "tool_type": [
                "Web application",
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0160"
            ],
            "primary_publication": [
                "10.1007/978-3-319-09192-1_4"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "GenOuest",
                    "email": "support@genouest.org",
                    "url": "http://www.genouest.org",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "CECILL-2.0",
            "documentation": "http://training.genouest.org/claroline/claroline/learnPath/learningPathList.php?cidReset=true&cidReq=LOGOL",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2018-12-10T12:58:34Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 243,
            "name": "RAPPAS",
            "description": "RAPPAS stands for Rapid Alignment-free Phylogenetic Placement via Ancestral Sequences. It uses an alignment-free approach for phylogenetic placement, thus removing the hurdle of query sequence alignment.",
            "homepage": "http://www.atgc-montpellier.fr/RAPPAS/",
            "biotoolsID": "RAPPAS",
            "biotoolsCURIE": "biotools:RAPPAS",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3293",
                "http://edamontology.org/topic_3174",
                "http://edamontology.org/topic_0637",
                "http://edamontology.org/topic_0091"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btz068"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Benjamin Linard",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/blinard-BIOINFO/RAPPAS",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:59:27.880847Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 122,
            "name": "microSysMics",
            "description": "This workflow provides an automated microbiome data analysis, starting with sequenced taxonomic markers (such as 16SrRNA) and using the standard QIIME2 toolbox to produce an abundance table and preliminary diversity, phylogeny and taxonomy analysis.",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/microSysMics",
            "biotoolsID": "microSysMics",
            "biotoolsCURIE": "biotools:microSysMics",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3697"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "http://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Samuel Chaffron",
                    "email": "samuel.chaffron@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-5903-617X",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Erwan Delage",
                    "email": "erwan.delage@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "http://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Contributor"
                    ],
                    "name": "Damien Vintache",
                    "email": "Damien.Vintache@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Michel Neunlist",
                    "email": "michel.neunlist@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1892-5071",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LS2N",
                    "email": null,
                    "url": "http://www.ls2n.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "TENS",
                    "email": null,
                    "url": "https://www.inserm-tens.com/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Contributor"
                    ],
                    "name": "Audrey Bihouée",
                    "email": "audrey.bihouee@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8689-2083",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": "Other",
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2023-09-19T15:06:56.878425Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": null
        },
        {
            "id": 208,
            "name": "MindTheGap",
            "description": "Performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome.",
            "homepage": "https://gatb.inria.fr/software/mind-the-gap/",
            "biotoolsID": "mindthegap",
            "biotoolsCURIE": "biotools:mindthegap",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "GATB"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0199"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/btu545"
            ],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Claire Lemaitre",
                    "email": "claire.lemaitre@inria.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://gatb.inria.fr/software/mind-the-gap/",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T20:58:48.627968Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 92,
            "name": "RARe",
            "description": "RARe is a research infrastructure registered on the french national roadmap that brings together five networks of BRCs conserving genetic, genomic, and biological resources assembled and characterized by research on domestic animals, model or cultivated plants, wild species related to domestic animals, forest trees, micro-organisms of agronomic or agri-food interest, micro-organisms and environmental organisms.\nThe purpose of this web portal is to facilitate the discoverability of these data. \nRARe search is an implementation of DataDiscovery.",
            "homepage": "https://urgi.versailles.inrae.fr/rare/",
            "biotoolsID": "RARe",
            "biotoolsCURIE": "biotools:RARe",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Support"
                    ],
                    "name": "Support service",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://urgi.versailles.inrae.fr/rare/about",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-07-29T13:42:40.608985Z",
            "teams": [
                "URGI"
            ],
            "source_repository": null
        },
        {
            "id": 91,
            "name": "DataDiscovery",
            "description": "DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.\n\nThis tool is expected to be easily customizable for specific filters, environments, or data schemas. Its current implementations supported by URGI are: WheatIS, Plant, RARe.",
            "homepage": "https://urgi.versailles.inrae.fr/data-discovery/",
            "biotoolsID": "DataDiscovery",
            "biotoolsCURIE": "biotools:DataDiscovery",
            "tool_type": [
                "Database portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [
                "elixir-fr-sdp-2019",
                "URGI",
                "FR"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3071",
                "http://edamontology.org/topic_0780",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_0610",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [
                "10.3835/plantgenome2015.06.0038"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact",
                        "Support"
                    ],
                    "name": "urgi-support",
                    "email": "urgi-support@inrae.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                }
            ],
            "tool_licence": "BSD-3-Clause",
            "documentation": "https://forgemia.inra.fr/urgi-is/data-discovery/blob/master/HELP.md",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-07-29T13:42:39.375595Z",
            "teams": [
                "URGI"
            ],
            "source_repository": "https://forgemia.inra.fr/urgi-is/data-discovery"
        },
        {
            "id": 207,
            "name": "Commet",
            "description": "This software provides a global similarity overview between all datasets of a large metagenomic project.",
            "homepage": "https://colibread.inria.fr/software/commet/",
            "biotoolsID": "commet",
            "biotoolsCURIE": "biotools:commet",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0080"
            ],
            "primary_publication": [
                "10.1109/BIBM.2014.6999135"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Peterlongo",
                    "email": "pierre.peterlongo@inria.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://github.com/pierrepeterlongo/commet/blob/master/doc/commet_user_guide.pdf",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2018-12-10T12:58:49Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 242,
            "name": "WAVES",
            "description": "WAVES is a web application dedicated to bioinformatic tool integration. It provides an efficient way to implement a service for any bioinformatic software. Such services are automatically made available in three ways: web pages, web forms to include in remote websites, and a RESTful web services API to access remotely from applications. In order to fulfill the service’s computational needs, WAVES can perform computation on various resources and environments, such as Galaxy instances.",
            "homepage": "http://www.atgc-montpellier.fr/waves/",
            "biotoolsID": "WAVES",
            "biotoolsCURIE": "biotools:WAVES",
            "tool_type": [
                "Bioinformatics portal",
                "Web service",
                "Web API",
                "Web application"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3372"
            ],
            "primary_publication": [
                "10.1093/bioinformatics/bty639"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "LIRMM",
                    "email": null,
                    "url": "http://www.lirmm.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Maintainer"
                    ],
                    "name": "Marc Chakiachvili",
                    "email": "mchakiachvili@ebi.ac.uk",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Contributor"
                    ],
                    "name": "Vincent Lefort",
                    "email": "vincent.lefort@lirmm.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "http://waves-core.readthedocs.io/",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 123,
            "name": "DEPIB",
            "description": "Analysis pipeline using Snakemake for RNAseq analysis in order to find differentially expressed genes.",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/RNAseq_quantif_pipeline",
            "biotoolsID": "DEPIB",
            "biotoolsCURIE": "biotools:DEPIB",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider",
                        "Support"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "BiRD",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Support"
                    ],
                    "name": "Eric Charpentier",
                    "email": "eric.charpentier@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Audrey Bihouée",
                    "email": "audrey.bihouee@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0002-8689-2083",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Erwan Delage",
                    "email": "erwan.delage@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Contributor"
                    ],
                    "name": "Damien Vintache",
                    "email": "Damien.Vintache@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Solenne Dumont",
                    "email": "solenne.dumont@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0003-3237-7382",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": 0,
            "citations": null,
            "annual_visits": 0,
            "last_update": "2024-11-24T14:40:03.286943Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": null
        },
        {
            "id": 278,
            "name": "metabocloud",
            "description": "Web portal to gather tools to improve metabolomic annotations through API microservices based on a cloud infrastructure.",
            "homepage": "https://metabocloud.mesocentre.uca.fr/",
            "biotoolsID": "metabocloud",
            "biotoolsCURIE": "biotools:metabocloud",
            "tool_type": [
                "Bioinformatics portal"
            ],
            "collection": [
                "metabolomic platform"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_3172"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux",
                "Windows",
                "Mac"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Contributor"
                    ],
                    "name": "Franck Giacomoni",
                    "email": "franck.giacomoni@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-6063-4214",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Provider"
                    ],
                    "name": "Nadia Goué",
                    "email": "nadia.goue@uca.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-2750-1473",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer",
                        "Contributor"
                    ],
                    "name": "Nils Paulhe",
                    "email": "nils.paulhe@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-4550-1258",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer",
                        "Provider"
                    ],
                    "name": "Thomas Bellembois",
                    "email": "thomas.bellembois@uca.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0009-0001-6661-0691",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Faustine Souc",
                    "email": "faustine.souc@inrae.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0009-0004-9172-0632",
                    "gridid": null,
                    "typeEntity": null,
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "Antoine Mahul",
                    "email": "antoine.mahul@uca.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-9729-1603",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": null,
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2025-01-22T10:11:29.320362Z",
            "teams": [
                "AuBi"
            ],
            "source_repository": null
        },
        {
            "id": 205,
            "name": "DiscoSNP",
            "description": "This software is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).",
            "homepage": "https://colibread.inria.fr/software/discosnp/",
            "biotoolsID": "discosnp",
            "biotoolsCURIE": "biotools:discosnp",
            "tool_type": [
                "Command-line tool"
            ],
            "collection": [
                "GATB"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_2885",
                "http://edamontology.org/topic_3168",
                "http://edamontology.org/topic_0199",
                "http://edamontology.org/topic_3053"
            ],
            "primary_publication": [
                "10.1093/nar/gku1187"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Pierre Peterlongo",
                    "email": "pierre.peterlongo@inria.fr",
                    "url": "https://colibread.inria.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenOuest",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://colibread.inria.fr/software/discosnp/",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-25T14:25:58.458039Z",
            "teams": [
                "GenOuest"
            ],
            "source_repository": null
        },
        {
            "id": 102,
            "name": "Sugarcane Genome Hub",
            "description": "The Sugarcane Genome Hub is an integrated web-based database providing centralized access to the sugarcane reference genome sequences and genomic resources.",
            "homepage": "https://sugarcane-genome.cirad.fr/",
            "biotoolsID": "Sugarcane_Genome_Hub",
            "biotoolsCURIE": "biotools:Sugarcane_Genome_Hub",
            "tool_type": [
                "Database portal"
            ],
            "collection": [
                "Genome Hub",
                "elixir-fr-sdp-2019"
            ],
            "scientific_topics": [
                "http://edamontology.org/topic_0621",
                "http://edamontology.org/topic_0622",
                "http://edamontology.org/topic_0091",
                "http://edamontology.org/topic_3810"
            ],
            "primary_publication": [],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Primary contact"
                    ],
                    "name": "Olivier Garsmeur",
                    "email": "olivier.garsmeur@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0001-8869-3689",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Gaetan Droc",
                    "email": "droc@cirad.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1849-1269",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Maintainer"
                    ],
                    "name": "CIRAD",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": "GPL-2.0",
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2020-06-16T10:55:27Z",
            "teams": [
                "South Green"
            ],
            "source_repository": null
        },
        {
            "id": 291,
            "name": "snoBoard",
            "description": "The snoBoard database compiles ribosomal RNA (rRNA) modifications, box C/D and box H/ACA snoRNA guides sequences for a number of species including Saccharomyces cerevisiae (Sc), Human (Hs), the plant Arabidopsis thaliana (At) and tomato Solanum lycopersicum (Sl). Mapped modifications are 2’-O methylation, pseudouridylation and other known modifications when available. The user interface allows the access to rRNA targets, mapped modifications and snoRNA guides under different views. Modifications can be accessed through a table (one line per modification), or mapped on their target RNA sequences and secondary structures. A comparative view allows to access to mapped sites conserved between a selected subset of species. Using the comparative view, it is possible to interrogate and visualize the conservation of target nucleotides sequences and modified sites. Information on modifications targets and snoRNA guides can be accessed by organism, snoRNA guide family and modification type.",
            "homepage": "https://snoboard.org/",
            "biotoolsID": "snoboard",
            "biotoolsCURIE": "biotools:snoboard",
            "tool_type": [
                "Database portal"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_0659",
                "http://edamontology.org/topic_3295"
            ],
            "primary_publication": [],
            "operating_system": [],
            "tool_credit": [
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Julien Touchais",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer"
                    ],
                    "name": "Philippe Bordron",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-1975-0920",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Contributor",
                        "Primary contact"
                    ],
                    "name": "Christine Gaspin",
                    "email": null,
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0003-0304-5186",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Provider"
                    ],
                    "name": "GenoToul bioinformatics facility",
                    "email": null,
                    "url": "https://bioinfo.genotoul.fr/",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": null,
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2026-08-25T12:23:22.038683Z",
            "teams": [],
            "source_repository": null
        },
        {
            "id": 283,
            "name": "3SRP",
            "description": "A Snakemake-based pipeline for 3' sequencing RNA profiling data analysis.  This 3’ Digital gene expression sequencing technique allows a precise and low-cost transcriptome profiling.\n\nThe main steps of the pipeline are:\n- Samples demultiplexing transform the raw paired-end fastq files into a single-end fastq file for each sample.\n- Alignment on refseq reference transcriptome is performed using bwa.\n- Aligned reads are parsed and UMI are counted for each gene in each sample to create an expression matrix.\nIf secondary analysis has been asked (providing a comparisons file), the expression matrix is normalized and differentially expressed genes (DEG) are searched using deseq2.\n- If DEG are found, annotation is performed using the database GO and KEGG.\n- A report is provided listing the main quality controls performed and the results found.\n\nCite : https://dx.doi.org/10.21203/rs.3.pex-1336/v1",
            "homepage": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline",
            "biotoolsID": "3SRP",
            "biotoolsCURIE": "biotools:3SRP",
            "tool_type": [
                "Workflow"
            ],
            "collection": [],
            "scientific_topics": [
                "http://edamontology.org/topic_3308"
            ],
            "primary_publication": [
                "10.1038/s41598-017-14892-x"
            ],
            "operating_system": [
                "Linux"
            ],
            "tool_credit": [
                {
                    "type_role": [
                        "Provider",
                        "Support"
                    ],
                    "name": "BiRD bioinformatics facility",
                    "email": "pf-bird@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr",
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Division",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Dimitri MEISTERMANN",
                    "email": "dimitri.meistermann@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Philippe Bordron",
                    "email": "philippe.bordron@univ-nantes.fr",
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [],
                    "name": "Broad Institute",
                    "email": null,
                    "url": null,
                    "orcidid": null,
                    "gridid": null,
                    "typeEntity": "Institute",
                    "note": "Some scripts of the pipeline regarding sample demultiplexing and UMI counting have been adapated and modified from this paper:\nXiong, Y., Soumillon, M., Wu, J. et al. A Comparison of mRNA Sequencing with Random Primed and 3′-Directed Libraries. Sci Rep 7, 14626 (2017)."
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Contributor"
                    ],
                    "name": "Audrey Bihouée",
                    "email": "audrey.bihouee@univ-nantes.fr",
                    "url": null,
                    "orcidid": "https://orcid.org/0000-0002-8689-2083",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Developer"
                    ],
                    "name": "Solenne Dumont",
                    "email": "solenne.dumont@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/qui-sommes-nous-/membres/",
                    "orcidid": "https://orcid.org/0000-0003-3237-7382",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                },
                {
                    "type_role": [
                        "Primary contact",
                        "Developer",
                        "Support"
                    ],
                    "name": "Eric Charpentier",
                    "email": "eric.charpentier@univ-nantes.fr",
                    "url": "https://pf-bird.univ-nantes.fr/about-us/members/",
                    "orcidid": "https://orcid.org/0000-0002-8571-7603",
                    "gridid": null,
                    "typeEntity": "Person",
                    "note": null
                }
            ],
            "tool_licence": null,
            "documentation": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline/-/wikis/home",
            "maturity": "Emerging",
            "cost": "Free of charge",
            "unique_visits": null,
            "citations": null,
            "annual_visits": null,
            "last_update": "2024-11-24T14:40:06.421826Z",
            "teams": [
                "BiRD"
            ],
            "source_repository": null
        }
    ]
}